RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TMEM42Q69YG0 159 aa18.27■□□□□ 0.51
TRIM28-201ENST00000253024 C6orf15Q6UXA7 325 aaPredicted RBP18.27■□□□□ 0.51
TRIM28-201ENST00000253024 KCNJ16Q9NPI9 418 aa18.27■□□□□ 0.51
TRIM28-201ENST00000253024 SMCO4Q9NRQ5 59 aa18.27■□□□□ 0.51
TRIM28-201ENST00000253024 IAPPP10997 89 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 FOXO1Q12778 655 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 NUFIP2Q7Z417 695 aaKnown RBP18.26■□□□□ 0.51
TRIM28-201ENST00000253024 OR1K1Q8NGR3 316 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 SUCNR1Q9BXA5 334 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 LIPGQ9Y5X9 500 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 CHST1O43916 411 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 SLC25A24Q6NUK1 477 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 CXorf67Q86X51 503 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-201ENST00000253024 GALNT14Q96FL9 552 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 PPP1R3CQ9UQK1 317 aa18.26■□□□□ 0.51
TRIM28-201ENST00000253024 USF3Q68DE3 2245 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 SLC22A20A6NK97 555 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 TRAPPC2LH3BP13 241 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 TXNL1O43396 289 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 NQO2P16083 231 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 PCBD1P61457 104 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 KCNE4Q8WWG9 221 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 C10orf35Q96D05 121 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 BOD1Q96IK1 185 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 OR1A1Q9P1Q5 309 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 PCSK5Q92824 1860 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 SIRPB1O00241 398 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 OR8B8Q15620 311 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 ARRDC1-AS1Q9H2J1 176 aa18.25■□□□□ 0.51
TRIM28-201ENST00000253024 ERRFI1Q9UJM3 462 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-201ENST00000253024 COLQQ9Y215 455 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-201ENST00000253024 CEBPDP49716 269 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ABHD17BQ5VST6 288 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ABLIM2Q6H8Q1 611 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ZNF100Q8IYN0 542 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 CCDC71LQ8N9Z2 235 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 CPNE4Q96A23 557 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-201ENST00000253024 IL17BQ9UHF5 180 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 GAPDHP04406 335 aaKnown RBP18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ECI1P42126 302 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 GFRA1P56159 465 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ERVS71-1P61550 626 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ZNF343Q6P1L6 599 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 TMPRSS7Q7RTY8 843 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 DECR2Q9NUI1 292 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 DMXL2Q8TDJ6 3036 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 NEURL1O76050 574 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 ZDHHC23Q8IYP9 409 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 LILRB1Q8NHL6 650 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-201ENST00000253024 TMEM222Q9H0R3 208 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 KCNS2Q9ULS6 477 aa18.24■□□□□ 0.51
TRIM28-201ENST00000253024 H0YL77 283 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 H2AFB1P0C5Y9 115 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 OR1C1Q15619 314 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 NCMAPQ5T1S8 102 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 SELENOHQ8IZQ5 122 aaKnown RBP18.23■□□□□ 0.51
TRIM28-201ENST00000253024 GCNT2Q8N0V5 402 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 TMEM252Q8N6L7 170 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 OR2M7Q8NG81 312 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 HIST1H2AAQ96QV6 131 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 TRDCB7Z8K6 153 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 RPL36A-HNRNPH2H7BZ11 118 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 HMGB3O15347 200 aaKnown RBP18.23■□□□□ 0.51
TRIM28-201ENST00000253024 CYTIPO60759 359 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 OR4D5Q8NGN0 318 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 PLPPR2Q96GM1 343 aa18.23■□□□□ 0.51
TRIM28-201ENST00000253024 C1orf196B1AJZ1 125 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 CER1O95813 267 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 PSG2P11465 335 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 SULT1A1P50225 295 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 DUSP3P51452 185 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-201ENST00000253024 FGF8P55075 233 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-201ENST00000253024 RAB5BP61020 215 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 RNF150Q9ULK6 438 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 POMT1Q9Y6A1 747 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 HSPA12AO43301 675 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 CELA3BP08861 270 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 FABP9Q0Z7S8 132 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 MKXQ8IYA7 352 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 SUMF2Q8NBJ7 301 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 RBMXL1Q96E39 390 aaKnown RBP18.22■□□□□ 0.51
TRIM28-201ENST00000253024 KPTNQ9Y664 436 aa18.22■□□□□ 0.51
TRIM28-201ENST00000253024 WDR1O75083 606 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 CA11O75493 328 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 ACAA1P09110 424 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-201ENST00000253024 EIF2S3LQ2VIR3 472 aaKnown RBP18.21■□□□□ 0.51
TRIM28-201ENST00000253024 MCEMP1Q8IX19 187 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 RSG1Q9BU20 258 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 C1QTNF5Q9BXJ0 243 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 Q9N2K0 584 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 OR14J1Q9UGF5 321 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 A0A1W2PNU3 283 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-201ENST00000253024 SOHLH1Q5JUK2 328 aa18.21■□□□□ 0.51
TRIM28-201ENST00000253024 CD300LBA8K4G0 201 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 NUDT19A8MXV4 375 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 C9orf172C9J069 976 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 SEC11BP0C7V7 166 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 LHX2P50458 406 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 ALKBH6Q3KRA9 238 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 TMEM211Q6ICI0 200 aa18.21■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms