RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GAPDHP04406 335 aaKnown RBP11.78□□□□□ -0.52
LDLR-201ENST00000252444 NQO2P16083 231 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 COL10A1Q03692 680 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 FAM90A26D6RGX4 464 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 C11orf87Q6NUJ2 197 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 Q96M66 194 aa11.78□□□□□ -0.52
LDLR-201ENST00000252444 ZNF106Q9H2Y7 1883 aaKnown RBP11.77□□□□□ -0.52
LDLR-201ENST00000252444 CLEC18AA5D8T8 446 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 HPRT1P00492 218 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 PRSS54Q6PEW0 395 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 SVBPQ8N300 66 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 CLEC18CQ8NCF0 446 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 NUP37Q8NFH4 326 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 MRGPRDQ8TDS7 321 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 IDI2-AS1Q9NZ38 188 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 PITPNC1Q9UKF7 332 aa11.77□□□□□ -0.52
LDLR-201ENST00000252444 FCGR3AP08637 254 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 FBP1P09467 338 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 OR8U1Q8NH10 309 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 REPIN1Q9BWE0 567 aaKnown RBP11.77□□□□□ -0.53
LDLR-201ENST00000252444 Q9N2K0 584 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 IGHV2OR16-5A0A0B4J2B6 119 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 FZR1Q9UM11 496 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 KPTNQ9Y664 436 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 TMEM14DPA8MWL7 114 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 PYCARD-AS1I3L0S3 204 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 MBNL2Q5VZF2 373 aaKnown RBP11.77□□□□□ -0.53
LDLR-201ENST00000252444 C19orf48Q6RUI8 117 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 GGNQ86UU5 652 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 NDFIP1Q9BT67 221 aa11.77□□□□□ -0.53
LDLR-201ENST00000252444 IGHV1-69-2A0A0G2JMI3 117 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 F8W036 122 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 IGHV1-2P23083 117 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 S100A2P29034 98 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 Q3ZCU0 254 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 OR10AD1Q8NGE0 317 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 OR2G3Q8NGZ4 309 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 RCL1Q9Y2P8 373 aaKnown RBP11.76□□□□□ -0.53
LDLR-201ENST00000252444 H0Y980 276 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 DCTN6O00399 190 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 HLXQ14774 488 aaPredicted RBP11.76□□□□□ -0.53
LDLR-201ENST00000252444 C15orf54Q8N8G6 183 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 MRPL24Q96A35 216 aaKnown RBP11.76□□□□□ -0.53
LDLR-201ENST00000252444 TMEM186Q96B77 213 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 SEC22AQ96IW7 307 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 CCL19Q99731 98 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 RASL11BQ9BPW5 248 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 WFDC6Q9BQY6 131 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 LPAR5Q9H1C0 372 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 SLC2A8Q9NY64 477 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 RAB5BP61020 215 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 RPL31P62899 125 aaKnown RBP11.76□□□□□ -0.53
LDLR-201ENST00000252444 ZNF260Q3ZCT1 412 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 ZNF468Q5VIY5 522 aaPredicted RBP11.76□□□□□ -0.53
LDLR-201ENST00000252444 DPPA3Q6W0C5 159 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 HIST2H3AQ71DI3 136 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 MUC15Q8N387 334 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 C9orf106Q8NAJ2 232 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 ADAMTS17Q8TE56 1095 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 ITLN1Q8WWA0 313 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 DEPPQ9NTK1 212 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 CLCF1Q9UBD9 225 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 TRIM77I1YAP6 450 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 ICMTO60725 284 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 C1QCP02747 245 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 OR5M8Q8NGP6 311 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 TMEM147Q9BVK8 224 aa11.76□□□□□ -0.53
LDLR-201ENST00000252444 HLA-DQB1P01920 261 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 MPV17P39210 176 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 C9orf152Q5JTZ5 239 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 ZNF645Q8N7E2 425 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 MEGF10Q96KG7 1140 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 MIXL1Q9H2W2 232 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 CBLN4Q9NTU7 201 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 SSSCA1O60232 199 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 SNRPNP63162 240 aaKnown RBP11.75□□□□□ -0.53
LDLR-201ENST00000252444 DHRS2Q13268 280 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 FAM209BQ5JX69 171 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 KDF1Q8NAX2 398 aaPredicted RBP11.75□□□□□ -0.53
LDLR-201ENST00000252444 ABHD14AQ9BUJ0 271 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 SMIM3Q9BZL3 60 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 WDR13Q9H1Z4 485 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 AKIRIN1Q9H9L7 192 aaPredicted RBP11.75□□□□□ -0.53
LDLR-201ENST00000252444 UQCC1Q9NVA1 299 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 BOLA2-SMG1P6H3BVE0 249 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 SOCS1O15524 211 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 TMEM190Q8WZ59 177 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 R3HDM4Q96D70 268 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 ASCL3Q9NQ33 180 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 POMT1Q9Y6A1 747 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 A0A0G2JMM0 328 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 A0A1W2PPB8 328 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 A0A1W2PRS3 328 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 FAM221AA4D161 298 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 KIR3DP1A8MWS1 328 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 FOXL2P58012 376 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 FLYWCH2Q96CP2 140 aaKnown RBP11.75□□□□□ -0.53
LDLR-201ENST00000252444 ARV1Q9H2C2 271 aa11.75□□□□□ -0.53
LDLR-201ENST00000252444 LEUTXA8MZ59 168 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 CECR9P0C854 216 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 264.9 ms