RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS4B-201ENST00000238497 TREM2Q9NZC2 230 aa7.37□□□□□ -1.23
VPS4B-201ENST00000238497 ANXA10Q9UJ72 324 aa7.37□□□□□ -1.23
VPS4B-201ENST00000238497 TRAV14DV4A0A0A6YYC5 116 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 RFPL4AA6NLU0 287 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 SERPINE3A8MV23 424 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 RFPL4AL1F8VTS6 287 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 CDIPTO14735 213 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 SMAD7O15105 426 aaKnown RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 RHBDL1O75783 438 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 TPPPO94811 219 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 THBDP07204 575 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 CEBPDP49716 269 aaPredicted RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 SSBP1Q04837 148 aaKnown RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 PPA1Q15181 289 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 GUSBP1Q15486 140 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 Q6ZT83 130 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 HOGA1Q86XE5 327 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 CCDC28AQ8IWP9 274 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 PDZD9Q8IXQ8 264 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 WFDC11Q8NEX6 87 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 TMEM185AQ8NFB2 350 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 OR1J1Q8NGS3 322 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 OR51H1Q8NH63 302 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 RTN4IP1Q8WWV3 396 aaPredicted RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 SCGB3A2Q96PL1 93 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 MAGT1Q9H0U3 335 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 TMEM231Q9H6L2 316 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 MSL2Q9HCI7 577 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 UBE2J1Q9Y385 318 aaPredicted RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 hCG_38984A0A1B0GV85 526 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 CALCRP30988 508 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 FBXW9Q5XUX1 488 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 ZNF826PQ6ZT77 177 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 MITD1Q8WV92 249 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 APOBEC3DQ96AK3 386 aaPredicted RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 Q96M66 194 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 MS4A7Q9GZW8 240 aaPredicted RBP7.36□□□□□ -1.23
VPS4B-201ENST00000238497 ZNF286AQ9HBT8 521 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 OR5AC2Q9NZP5 309 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 KCNS2Q9ULS6 477 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 GPR132Q9UNW8 380 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 ABCA1O95477 2261 aa7.36□□□□□ -1.23
VPS4B-201ENST00000238497 M0R1B8 84 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 DNPH1O43598 174 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 DUS4LO95620 317 aaKnown RBP7.35□□□□□ -1.23
VPS4B-201ENST00000238497 MELTFP08582 738 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 MMP7P09237 267 aaPredicted RBP7.35□□□□□ -1.23
VPS4B-201ENST00000238497 SCTP09683 121 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 OR5AC1P0C628 307 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 RCC1P18754 421 aaPredicted RBP7.35□□□□□ -1.23
VPS4B-201ENST00000238497 CCL1P22362 96 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 IGHV1-2P23083 117 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 OTX1P32242 354 aaPredicted RBP7.35□□□□□ -1.23
VPS4B-201ENST00000238497 P2RX3P56373 397 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 TGFBR3Q03167 851 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 FGL1Q08830 312 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 SMCO1Q147U7 214 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ARRDC1Q8N5I2 433 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 TPRX1Q8N7U7 411 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 NEUROG1Q92886 237 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 MRPL24Q96A35 216 aaKnown RBP7.35□□□□□ -1.23
VPS4B-201ENST00000238497 SLC5A7Q9GZV3 580 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 GP6Q9HCN6 339 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 RNF115Q9Y4L5 304 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 SESN1Q9Y6P5 492 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ZNF724A8MTY0 619 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ABCD4O14678 606 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 IFNA2P01563 188 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 FUT3P21217 361 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 CBX5P45973 191 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 BSPH1Q075Z2 132 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 OR2B11Q5JQS5 317 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ZNF529Q6P280 563 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 LYZL2Q7Z4W2 148 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ST8SIA2Q92186 375 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 TMEM230Q96A57 120 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 RTBDNQ9BSG5 229 aaPredicted RBP7.35□□□□□ -1.23
VPS4B-201ENST00000238497 HRH4Q9H3N8 390 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 NECAP2Q9NVZ3 263 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 SDHAF2Q9NX18 166 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 RNF150Q9ULK6 438 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 MSGN1A6NI15 193 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 NXPH2O95156 264 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 FCGR3AP08637 254 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ATP5J2P56134 94 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 TAS2R31P59538 309 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 BTN1A1Q13410 526 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 PNLIPRP3Q17RR3 467 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 Q5PR19 223 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 AADACL3Q5VUY0 350 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 FBXW12Q6X9E4 464 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 ZDHHC22Q8N966 263 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 FOXC2Q99958 501 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 GHRLQ9UBU3 117 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 NPTNQ9Y639 398 aa7.35□□□□□ -1.23
VPS4B-201ENST00000238497 PDCD6O75340 191 aa7.34□□□□□ -1.23
VPS4B-201ENST00000238497 SFT2D2O95562 160 aa7.34□□□□□ -1.23
VPS4B-201ENST00000238497 AADACP22760 399 aa7.34□□□□□ -1.23
VPS4B-201ENST00000238497 ARR3P36575 388 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms