RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PROB1E7EW31 1015 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 TUSC2O75896 110 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 ARG1P05089 322 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 UCP1P25874 307 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 RAB1AP62820 205 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 NMSQ5H8A3 153 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 PEAR1Q5VY43 1037 aaPredicted RBP16.04■□□□□ 0.16
CPSF3-201ENST00000238112 CCL28Q9NRJ3 127 aa16.04■□□□□ 0.16
CPSF3-201ENST00000238112 PUS1Q9Y606 427 aaKnown RBP eCLIP16.04■□□□□ 0.16
CPSF3-201ENST00000238112 hCG_1809904A0A1W2PP81 198 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 A0A1W2PR64 198 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 A0A1W2PRV1 198 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 CLEC18AA5D8T8 446 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 RBFOX3A6NFN3 312 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 CST7O76096 145 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 ACAA1P09110 424 aaPredicted RBP16.03■□□□□ 0.16
CPSF3-201ENST00000238112 BAXQ07812 192 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 TUSC5Q8IXB3 177 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 FAM24BQ8N5W8 94 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 IL22RA1Q8N6P7 574 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 CLEC18CQ8NCF0 446 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 OR8G5Q8NG78 346 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 THOC3Q96J01 351 aaKnown RBP16.03■□□□□ 0.16
CPSF3-201ENST00000238112 GLRX2Q9NS18 164 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 LOXL2Q9Y4K0 774 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 A0A1W2PPE2 198 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 UBE2CO00762 179 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 NXPH3O95157 252 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 SYNGR4O95473 234 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 S100A8P05109 93 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 COX5BP10606 129 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 CBR1P16152 277 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 S100GP29377 79 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 DYNLT3P51808 116 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 TMEM217Q8N7C4 229 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 GNPNAT1Q96EK6 184 aaPredicted RBP16.03■□□□□ 0.16
CPSF3-201ENST00000238112 FAM173AQ9BQD7 235 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 ABHD14AQ9BUJ0 271 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 B4GALT7Q9UBV7 327 aa16.03■□□□□ 0.16
CPSF3-201ENST00000238112 BTBD17A6NE02 478 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 TNFSF12O43508 249 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 S100A9P06702 114 aaKnown RBP16.02■□□□□ 0.16
CPSF3-201ENST00000238112 TDGF1P13385 188 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 MMP9P14780 707 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 LHX2P50458 406 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 ID3Q02535 119 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 TIPARPQ7Z3E1 657 aaKnown RBP16.02■□□□□ 0.16
CPSF3-201ENST00000238112 OR5D13Q8NGL4 314 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 PSMF1Q92530 271 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 SIGLEC12Q96PQ1 595 aa16.02■□□□□ 0.16
CPSF3-201ENST00000238112 RIMS4Q9H426 269 aaPredicted RBP16.02■□□□□ 0.16
CPSF3-201ENST00000238112 UNKLQ9H9P5 680 aaKnown RBP16.02■□□□□ 0.16
CPSF3-201ENST00000238112 IGKV1-6A0A0C4DH72 117 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 H0Y980 276 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 SLC33A1O00400 549 aaPredicted RBP16.02■□□□□ 0.15
CPSF3-201ENST00000238112 CCL20P78556 96 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 OR2M7Q8NG81 312 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 OR5A2Q8NGI9 324 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 IL22RA2Q969J5 263 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 PRRG4Q9BZD6 226 aa16.02■□□□□ 0.15
CPSF3-201ENST00000238112 ZNF703Q9H7S9 590 aaPredicted RBP16.02■□□□□ 0.15
CPSF3-201ENST00000238112 LAMTOR5O43504 91 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 SYNGR1O43759 233 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 CHST1O43916 411 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 SLC34A2O95436 690 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 ADAM5Q6NVV9 412 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 PLK3Q9H4B4 646 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 ZNF552Q9H707 407 aaPredicted RBP16.01■□□□□ 0.15
CPSF3-201ENST00000238112 TMEM50AO95807 157 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 CELA3AP09093 270 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 SMIM6P0DI80 62 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 FOXG1P55316 489 aaPredicted RBP16.01■□□□□ 0.15
CPSF3-201ENST00000238112 B2MP61769 119 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 AKR1C8PQ5T2L2 129 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 SPSB3Q6PJ21 355 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 KIAA1456Q9P272 454 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 VPS13AQ96RL7 3174 aa16.01■□□□□ 0.15
CPSF3-201ENST00000238112 A0A1W2PPE3 182 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 ZNF503-AS2A6NEH8 195 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 PGLYRP1O75594 196 aaPredicted RBP16■□□□□ 0.15
CPSF3-201ENST00000238112 PDGFBP01127 241 aaPredicted RBP16■□□□□ 0.15
CPSF3-201ENST00000238112 NGFP01138 241 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 ZNF806P0C7X5 589 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 HOXB1P14653 301 aaPredicted RBP16■□□□□ 0.15
CPSF3-201ENST00000238112 CLDN18P56856 261 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 FABP9Q0Z7S8 132 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 LINC00596Q86U02 117 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 PLPPR1Q8TBJ4 325 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 OR2C1O95371 312 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 ARR3P36575 388 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 PLP2Q04941 152 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 ZNF154Q13106 437 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 HIKESHIQ53FT3 197 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 TCEAL6Q6IPX3 200 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 ODF3L1Q8IXM7 274 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 MRPL30Q8TCC3 161 aaKnown RBP16■□□□□ 0.15
CPSF3-201ENST00000238112 APH1AQ96BI3 265 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 OPA3Q9H6K4 179 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 PRDM6Q9NQX0 595 aa16■□□□□ 0.15
CPSF3-201ENST00000238112 METTL1Q9UBP6 276 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms