RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ZNF728P0DKX0 622 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 SLC25A4P12235 298 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 GSG1LQ6UXU4 331 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 TMUB2Q71RG4 321 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 NEK7Q8TDX7 302 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 PPP1R1CQ8WVI7 109 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 MOB3AQ96BX8 217 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 COMMD9Q9P000 198 aa19.1■□□□□ 0.65
CDX1-201ENST00000231656 DOPEY1Q5JWR5 2465 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 TRBV6-6A0A0A6YYG2 114 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 CDIPTO14735 213 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 IGHV3-13P01766 116 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 ACAA1P09110 424 aaPredicted RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 S100A11P31949 105 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 GLP1RP43220 463 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 IGSF11Q5DX21 431 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 MRPL30Q8TCC3 161 aaKnown RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 TOMM40LQ969M1 308 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 RIMS4Q9H426 269 aaPredicted RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 RALYQ9UKM9 306 aaKnown RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 UBR5O95071 2799 aaPredicted RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 IGLV3-9A0A075B6K5 115 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 C5orf51A6NDU8 294 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 HS3ST1O14792 307 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 SIAH2O43255 324 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 CFDP00746 253 aaPredicted RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 IFNA2P01563 188 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 UCP3P55916 312 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 KLF3P57682 345 aaPredicted RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 C11orf87Q6NUJ2 197 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 Q6ZR03 302 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 DMRTC2Q8IXT2 367 aaPredicted RBP19.09■□□□□ 0.65
CDX1-201ENST00000231656 NMES1Q9C002 83 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 ATP23Q9Y6H3 246 aa19.09■□□□□ 0.65
CDX1-201ENST00000231656 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP19.08■□□□□ 0.64
CDX1-201ENST00000231656 A0A1B0GWJ7 208 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 SHISA9B4DS77 424 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 DEGS1O15121 323 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 ADAP1O75689 374 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 GRPP07492 148 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 CD3EP07766 207 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 AADACP22760 399 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 BEX5Q5H9J7 111 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 SGPP2Q8IWX5 399 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 RDH5Q92781 318 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 PIK3IP1Q96FE7 263 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 SYT3Q9BQG1 590 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 CXXC4Q9H2H0 198 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 ABCA4P78363 2273 aa19.08■□□□□ 0.64
CDX1-201ENST00000231656 C13orf42A0A1B0GVH6 325 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 TRDCB7Z8K6 153 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 FXYD4P59646 89 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 EXOSC2Q13868 293 aaKnown RBP19.07■□□□□ 0.64
CDX1-201ENST00000231656 RBM39Q14498 530 aaKnown RBP19.07■□□□□ 0.64
CDX1-201ENST00000231656 ZNF880Q6PDB4 577 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 C5orf24Q7Z6I8 188 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 ZNF546Q86UE3 836 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 C11orf53Q8IXP5 236 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 MRPL37Q9BZE1 423 aaKnown RBP19.07■□□□□ 0.64
CDX1-201ENST00000231656 MFFQ9GZY8 342 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 RDH8Q9NYR8 311 aa19.07■□□□□ 0.64
CDX1-201ENST00000231656 IGHV3-64DA0A0J9YX35 117 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 SCTP09683 121 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 PIGPP57054 158 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 LRRC37A5PQ49AS3 106 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 C20orf204Q6ZNR8 217 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 POC1AQ8NBT0 407 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 MRPL24Q96A35 216 aaKnown RBP19.06■□□□□ 0.64
CDX1-201ENST00000231656 RSRP1Q9BUV0 290 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 ARL6Q9H0F7 186 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 TLNRD1Q9H1K6 362 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 HES4Q9HCC6 221 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 MSL2Q9HCI7 577 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 TNFSF18Q9UNG2 199 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 COL12A1Q99715 3063 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 KIR2DS1A0A191URI9 304 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 PPYP01298 95 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 IFNA7P01567 189 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 ZNF44P15621 663 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 S100A1P23297 94 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 KIR2DS4P43632 304 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 HERV-K104P61576 105 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 CYCSP99999 105 aaKnown RBP19.06■□□□□ 0.64
CDX1-201ENST00000231656 KIR2DS1Q14954 304 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 HERPUD1Q15011 391 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 ZNF146Q15072 292 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 SLC38A6Q8IZM9 456 aa19.06■□□□□ 0.64
CDX1-201ENST00000231656 TEX13DA0A0J9YY54 714 aaPredicted RBP19.05■□□□□ 0.64
CDX1-201ENST00000231656 MPTX1A8MV57 137 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 DEFB108AA8MXU0 73 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 C19orf84I3L1E1 186 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 NXPH2O95156 264 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 RBMXP38159 391 aaKnown RBP19.05■□□□□ 0.64
CDX1-201ENST00000231656 SELENOVP59797 346 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 ADIPOQQ15848 244 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 NAA60Q9H7X0 242 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 PKDREJQ9NTG1 2253 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 C1orf123Q9NWV4 160 aa19.05■□□□□ 0.64
CDX1-201ENST00000231656 IGKV1-6A0A0C4DH72 117 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 SLC33A1O00400 549 aaPredicted RBP19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms