RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 OR4S2Q8NH73 311 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 APOBEC3DQ96AK3 386 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ALG14Q96F25 216 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SLC25A2Q9BXI2 301 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SDF2L1Q9HCN8 221 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CHST1O43916 411 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SRSF10O75494 262 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SMIM17P0DL12 118 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SELENOTP62341 195 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CPEB3Q8NE35 698 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 VSTM2AQ8TAG5 236 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 AAMDCQ9H7C9 122 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TRBV23-1A0A0A0MS06 115 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM30CPA0ZSE6 113 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ADM5C9JUS6 153 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 P01737 135 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 UMODP07911 640 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 Q56UQ5 140 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 RPS19BP1Q86WX3 136 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 C9orf40Q8IXQ3 194 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 OR1L1Q8NH94 360 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 RNF133Q8WVZ7 376 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 PGLYRP3Q96LB9 341 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 GUCD1Q96NT3 240 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 SSBP4Q9BWG4 385 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 EGLN1Q9GZT9 426 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 HELTA6NFD8 242 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 NKX6-3A6NJ46 265 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 TMPRSS11DO60235 418 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CDKN1BP46527 198 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 CTU1Q7Z7A3 348 aaKnown RBP4.13□□□□□ -1.75
SCN1A-220ENST00000641603 AMER3Q8N944 861 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 MUCL1Q96DR8 90 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 ULBP3Q9BZM4 244 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 UBTD1Q9HAC8 227 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 HIF1ANQ9NWT6 349 aa4.13□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1W2PRU2 124 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 LRRC3CA6NJW4 275 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 H0YGG7 62 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 SOCS7O14512 581 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PLPP4Q5VZY2 271 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR2M7Q8NG81 312 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CLDN23Q96B33 292 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 SCN7AQ01118 1682 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 IDSB3KWA1 339 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 EPPINO95925 133 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR4A8P0C604 315 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 YBX1P67809 324 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 RAE1P78406 368 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 DCDP81605 110 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR10V1Q8NGI7 309 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR13C6PQ8NH95 151 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MBD3L1Q8WWY6 194 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR6C1Q96RD1 312 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 HSD17B10Q99714 261 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 DERL1Q9BUN8 251 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF257Q9Y2Q1 563 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 ASXL3Q9C0F0 2248 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CNTRLQ7Z7A1 2325 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PAPPAQ13219 1627 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 A1L4Q6 167 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 DRD1P21728 446 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 SLC35B1P78383 322 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM30BQ3MIR4 351 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MEX3DQ86XN8 651 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 OR4D5Q8NGN0 318 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 RHBDD1Q8TEB9 315 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 AGMATQ9BSE5 352 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MRPL18Q9H0U6 180 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 LY96Q9Y6Y9 160 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 A8MWP6 167 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 H0YIG0 161 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MRPL33O75394 65 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 TIMP1P01033 207 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 SP1P08047 785 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 IER3P46695 156 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 INSM1Q01101 510 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MEF2CQ06413 473 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 HSD52Q0P140 79 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 FAM53BQ14153 422 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 GBGT1Q8N5D6 347 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 STARD5Q9NSY2 213 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MARF1Q9Y4F3 1742 aaKnown RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CRYM-AS1A6NIL9 109 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CCL16O15467 120 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 HYAL3O43820 417 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-220ENST00000641603 MPZL1O95297 269 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 C1QTNF9P0C862 333 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 KISS1Q15726 138 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 D2HGDHQ8N465 521 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 NPEPL1Q8NDH3 523 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PRNDQ9UKY0 176 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 J3QR06 171 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 PPYP01298 95 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 CLDN17P56750 224 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 AAED1Q7RTV5 226 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 ATP5L2Q7Z4Y8 100 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 GNB1LQ9BYB4 327 aa4.12□□□□□ -1.75
SCN1A-220ENST00000641603 FLRT3Q9NZU0 649 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms