RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 C22orf46C9J442 243 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SULT1C2O00338 296 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 NDUFB3O43676 98 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 ANGPTL7O43827 346 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 CRTAPO75718 401 aaPredicted RBP8.17□□□□□ -1.1
CLN3-261ENST00000637686 HTR3BO95264 441 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 MPIG6BO95866 241 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 KNG1P01042 644 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SFTPBP07988 381 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 MELTFP08582 738 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 GSTP1P09211 210 aaKnown RBP8.17□□□□□ -1.1
CLN3-261ENST00000637686 PSG2P11465 335 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SELLP14151 372 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SERPINA2P20848 420 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 CDK2P24941 298 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 GABRA2P47869 451 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SSBP1Q04837 148 aaKnown RBP8.17□□□□□ -1.1
CLN3-261ENST00000637686 PAX8Q06710 450 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 ZNF146Q15072 292 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 PNLIPRP3Q17RR3 467 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SMIM21Q3B7S5 101 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 TMEM69Q5SWH9 247 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 ATPAF1Q5TC12 328 aaPredicted RBP8.17□□□□□ -1.1
CLN3-261ENST00000637686 HACD4Q5VWC8 232 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 CD276Q5ZPR3 534 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 BTNL3Q6UXE8 466 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 ACP7Q6ZNF0 438 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SLC36A1Q7Z2H8 476 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 FAM58AQ8N1B3 248 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 TMEM104Q8NE00 496 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 OR4M1Q8NGD0 313 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 DEDD2Q8WXF8 326 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 ST8SIA4Q92187 359 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SLAMF9Q96A28 289 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 GAFA1Q96PS6 74 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 SCPEP1Q9HB40 452 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 ELL3Q9HB65 397 aaPredicted RBP8.17□□□□□ -1.1
CLN3-261ENST00000637686 RCC2Q9P258 522 aaKnown RBP8.17□□□□□ -1.1
CLN3-261ENST00000637686 AUP1Q9Y679 476 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 CUBNO60494 3623 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 WNK2Q9Y3S1 2297 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 IGKV1D-17A0A075B6S4 117 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 NKX6-3A6NJ46 265 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 RFPL4AA6NLU0 287 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 SERPINE3A8MV23 424 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 RFPL4AL1F8VTS6 287 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 GSTZ1O43708 216 aaPredicted RBP8.16□□□□□ -1.1
CLN3-261ENST00000637686 NXPH2O95156 264 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 IFNA2P01563 188 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 BCL3P20749 454 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 NPBWR2P48146 333 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 KCNJ3P48549 501 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 EFNB2P52799 333 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 LRRC10Q5BKY1 277 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 OR10K2Q6IF99 312 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 FAM131AQ6UXB0 335 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 ZNF788Q6ZQV5 615 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 BTN2A1Q7KYR7 527 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 TEX29Q8N6K0 151 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 CD177Q8N6Q3 437 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 CHST4Q8NCG5 386 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 OR10R2Q8NGX6 335 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 NANPQ8TBE9 248 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 ZFAND2BQ8WV99 257 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 EMG1Q92979 244 aaKnown RBP8.16□□□□□ -1.1
CLN3-261ENST00000637686 BORCS5Q969J3 196 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 DACT3Q96B18 629 aaPredicted RBP8.16□□□□□ -1.1
CLN3-261ENST00000637686 MED30Q96HR3 178 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 SELENOIQ9C0D9 397 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 SRRQ9GZT4 340 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 DNTTIP1Q9H147 329 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 ATG5Q9H1Y0 275 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 GLS2Q9UI32 602 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 ZNF107Q9UII5 783 aaPredicted RBP8.16□□□□□ -1.1
CLN3-261ENST00000637686 METRNQ9UJH8 293 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 ZNF222Q9UK12 451 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 ST3GAL6Q9Y274 331 aa8.16□□□□□ -1.1
CLN3-261ENST00000637686 A0A0A6YYD4 124 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 A0A1W2PP11 408 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 F8VVB4 439 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 F8VWA3 439 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 GABARAPH6UMI1 98 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 SIGLEC5O15389 551 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 ENSAO43768 121 aaKnown RBP8.15□□□□□ -1.1
CLN3-261ENST00000637686 PDCD6O75340 191 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 HLA-DQB1P01920 261 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 HIST1H1DP16402 221 aaKnown RBP8.15□□□□□ -1.1
CLN3-261ENST00000637686 FUT3P21217 361 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 LMO1P25800 156 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 CHATP28329 748 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 PRDX2P32119 198 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 CEBPDP49716 269 aaPredicted RBP8.15□□□□□ -1.1
CLN3-261ENST00000637686 TAS2R20P59543 309 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 IL13RA1P78552 427 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 PAX5Q02548 391 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 IL18Q14116 193 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 ZNF79Q15937 498 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 ZNRF1Q8ND25 227 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 OR10K1Q8NGX5 313 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 SMIM4Q8WVI0 70 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms