RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 DSCAML1Q8TD84 2053 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 DNAH9Q9NYC9 4486 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 MEIKINA0A087WXM9 373 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 A0A087X0M5 115 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 A0A1B0GX30 115 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 E9PI62 339 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 CCDC159P0C7I6 412 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 FAM106CPP0CH98 169 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 HES1Q14469 280 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 KISS1Q15726 138 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 ZSCAN26Q16670 478 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 CCDC144NLQ6NUI1 221 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 ETV3LQ6ZN32 361 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 MRPL41Q8IXM3 137 aaKnown RBP12.8□□□□□ -0.36
CLN3-246ENST00000636228 DRAM1Q8N682 238 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 ACBD7Q8N6N7 88 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 CHST4Q8NCG5 386 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 TRUB1Q8WWH5 349 aaKnown RBP12.8□□□□□ -0.36
CLN3-246ENST00000636228 PYDC1Q8WXC3 89 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 RPEQ96AT9 228 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 CREB3L1Q96BA8 519 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 LGALS12Q96DT0 336 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 CALYQ9NYX4 217 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 OR6C3Q9NZP0 311 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 EXOGQ9Y2C4 368 aaKnown RBP12.8□□□□□ -0.36
CLN3-246ENST00000636228 MOB4Q9Y3A3 225 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 HSPE1-MOB4S4R3N1 261 aa12.8□□□□□ -0.36
CLN3-246ENST00000636228 TRAV24A0A0B4J272 114 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 A0A1W2PPE3 182 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A18PA6NE21 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A16PA6NEW6 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A20PA6NIJ5 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A9PA6NNJ1 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A12PA8MX19 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A5PA8MXJ8 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 J3QR06 171 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 M0QZK8 103 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 CLIC3O95833 236 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A15PP0C7V4 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A13PP0C7W8 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A14PP0C7W9 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 FAM90A24PP0C7X0 464 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 GNG10P50151 68 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 SNRPGP62308 76 aaKnown RBP12.79□□□□□ -0.36
CLN3-246ENST00000636228 PAN3Q58A45 887 aaKnown RBP12.79□□□□□ -0.36
CLN3-246ENST00000636228 ZNF691Q5VV52 312 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 OR51T1Q8NGJ9 327 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 OR10K1Q8NGX5 313 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 PLPPR1Q8TBJ4 325 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 IDI2-AS1Q9NZ38 188 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 ZNF581Q9P0T4 197 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 PSG11Q9UQ72 335 aa12.79□□□□□ -0.36
CLN3-246ENST00000636228 A0A1W2PPI3 338 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 LINC01548A6NM66 108 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 OOSP1A8MZH6 123 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 EBAG9O00559 213 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 EI24O14681 340 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 SULT1B1O43704 296 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 ZFPL1O95159 310 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 DUS4LO95620 317 aaKnown RBP12.78□□□□□ -0.36
CLN3-246ENST00000636228 ALPLP05186 524 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 VSIG8P0DPA2 414 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 TMEM11P17152 192 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 SLC25A30Q5SVS4 291 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 C8orf86Q6ZUL3 223 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 SATL1Q86VE3 508 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 SERPINA12Q8IW75 414 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 ZNF565Q8N9K5 539 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 OR5D14Q8NGL3 314 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 CNIH3Q8TBE1 160 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 MRGPRDQ8TDS7 321 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 PDCD1LG2Q9BQ51 273 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 ALG8Q9BVK2 526 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 RHOFQ9HBH0 211 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 AMBNQ9NP70 447 aa12.78□□□□□ -0.36
CLN3-246ENST00000636228 SERPINE3A8MV23 424 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 DBTP11182 482 aaKnown RBP12.77□□□□□ -0.37
CLN3-246ENST00000636228 C21orf33P30042 268 aaPredicted RBP12.77□□□□□ -0.37
CLN3-246ENST00000636228 MTNR1BP49286 362 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 THBS3P49746 956 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 RPL23AP62750 156 aaKnown RBP12.77□□□□□ -0.37
CLN3-246ENST00000636228 EGFEM1PQ0D2K5 195 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 GALEQ14376 348 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 PIGYQ3MUY2 71 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 MEDAGQ5VYS4 303 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 OR2W3Q7Z3T1 314 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 THNSL2Q86YJ6 484 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 C5orf56Q8N8D9 126 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 OR51A2Q8NGJ7 313 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 TSEN15Q8WW01 171 aaKnown RBP12.77□□□□□ -0.37
CLN3-246ENST00000636228 RBMXL1Q96E39 390 aaKnown RBP12.77□□□□□ -0.37
CLN3-246ENST00000636228 DUX3Q96PT4 197 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 BARHL1Q9BZE3 327 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 DHDHQ9UQ10 334 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 AMMECR1Q9Y4X0 333 aaPredicted RBP12.77□□□□□ -0.37
CLN3-246ENST00000636228 RYR3Q15413 4870 aa12.77□□□□□ -0.37
CLN3-246ENST00000636228 NBEAL2Q6ZNJ1 2754 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 NUDT19A8MXV4 375 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 E9PQ18 207 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 GABRPO00591 440 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms