RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PIGYQ3MUY2 71 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 LINC00596Q86U02 117 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 OR1L1Q8NH94 360 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 LILRB1Q8NHL6 650 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-219ENST00000620786 DNASE2BQ8WZ79 361 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 ZDHHC11Q9H8X9 412 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 PLAC1Q9HBJ0 212 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 SF3B6Q9Y3B4 125 aaKnown RBP9.96□□□□□ -0.81
CLIP1-219ENST00000620786 SMAD7O15105 426 aaKnown RBP9.96□□□□□ -0.81
CLIP1-219ENST00000620786 FGF9P31371 208 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-219ENST00000620786 RPL31P62899 125 aaKnown RBP9.96□□□□□ -0.81
CLIP1-219ENST00000620786 Q1RN00 199 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 Q6ZNX1 250 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 LIAT1Q6ZQX7 453 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 C1orf174Q8IYL3 243 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 Q8WTZ3 238 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 MTFP1Q9UDX5 166 aa9.96□□□□□ -0.81
CLIP1-219ENST00000620786 TRIP11Q15643 1979 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 CDK2AP1O14519 115 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 ADAM10O14672 748 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 IGKV1D-16P01601 117 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 CSF2RBP32927 897 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 UCP2P55851 309 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 ZBTB44Q8NCP5 570 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 CCL13Q99616 98 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 A0A1W2PPE3 182 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 HLA-DRB3P79483 266 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 PDPNQ86YL7 162 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 ZNF714Q96N38 554 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 RBM14Q96PK6 669 aaKnown RBP9.96□□□□□ -0.82
CLIP1-219ENST00000620786 P2RX4Q99571 388 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 GSX2Q9BZM3 304 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 HILPDAQ9Y5L2 63 aa9.96□□□□□ -0.82
CLIP1-219ENST00000620786 IL11P20809 199 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 CDC34P49427 236 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-219ENST00000620786 TPPP2P59282 170 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 RNF2Q99496 336 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 PRSS50Q9UI38 385 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 ADAMTS7Q9UKP4 1686 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 SOCS1O15524 211 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 PRDX2P32119 198 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 ATP5J2P56134 94 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 C4orf17Q53FE4 359 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 WNT2BQ93097 391 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 RNF122Q9H9V4 155 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 YTHDF2Q9Y5A9 579 aaKnown RBP9.95□□□□□ -0.82
CLIP1-219ENST00000620786 CDCP2Q5VXM1 449 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 OR2V2Q96R30 315 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 ZNF586Q9NXT0 402 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 UFC1Q9Y3C8 167 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 LY75O60449 1722 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 LOC101059948A0A1B0GTJ6 334 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 SMPD2O60906 423 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 ID1P41134 155 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 GFRA1P56159 465 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 SLC35B1P78383 322 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 MPV17LQ2QL34 196 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 SHISA5Q8N114 240 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 DOCK5Q9H7D0 1870 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 TRAV39A0A0B4J263 110 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 LOC102723971A0A1B0GUV8 181 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 LOXL3P58215 753 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 UBE2L3P68036 154 aaKnown RBP9.95□□□□□ -0.82
CLIP1-219ENST00000620786 ATP6V1FQ16864 119 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 NSUN5P2Q63ZY6 315 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 SLC16A12Q6ZSM3 486 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 ANXA10Q9UJ72 324 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 PRNDQ9UKY0 176 aa9.95□□□□□ -0.82
CLIP1-219ENST00000620786 DAOP14920 347 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 TEX30Q5JUR7 227 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 GAPTQ8N292 157 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 OR10G4Q8NGN3 311 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 OR10G9Q8NGN4 311 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 OR10G7Q8NGN6 311 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 ZNF596Q8TC21 504 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 ARID1BQ8NFD5 2236 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-219ENST00000620786 LNP1A1A4G5 178 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 ADRB1P08588 477 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 COX6A1P12074 109 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 DEFA6Q01524 100 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 RAB32Q13637 225 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 IL13RA2Q14627 380 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 AKIP1Q9NQ31 210 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 PARP11Q9NR21 331 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 POLR2AP24928 1970 aaKnown RBP9.94□□□□□ -0.82
CLIP1-219ENST00000620786 MAP1LC3B2A6NCE7 125 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 HAX1O00165 279 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 ZNHIT1O43257 154 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 DHRS2Q13268 280 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 ZNF488Q96MN9 340 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 MAP1LC3BQ9GZQ8 125 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 SPNP16150 400 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 CD200P41217 278 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 ZNF429Q86V71 674 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 DYRK2Q92630 601 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 TGIF2Q9GZN2 237 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 PILRAQ9UKJ1 303 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 RNF115Q9Y4L5 304 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 A1L4Q6 167 aa9.94□□□□□ -0.82
CLIP1-219ENST00000620786 CST4P01036 141 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms