RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ZNF780BQ9Y6R6 833 aa3.31□□□□□ -1.88
LINC00540-201ENST00000611481 DNAH5Q8TE73 4624 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 MEIOCA2RUB1 952 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NUPR2A6NF83 97 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 EPM2AB3EWF7 344 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 SEC14L6B5MCN3 397 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 M0R3G1 203 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 SIRPB1O00241 398 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NDUFAB1O14561 156 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 PHYHO14832 338 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 AIM2O14862 343 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NPFFO15130 113 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 RAD51CO43502 376 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 PSTPIP1O43586 416 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 ALDOBP05062 364 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 KLK1P06870 262 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NQO2P16083 231 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 SERPINB1P30740 379 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 MAP3K8P41279 467 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 MARCKSL1P49006 195 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 CDKN2DP55273 166 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 TMEM50BP56557 158 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 TNFAIP6P98066 277 aaPredicted RBP3.3□□□□□ -1.88
LINC00540-201ENST00000611481 RAB40BQ12829 278 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 STX3Q13277 289 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NDUFAF6Q330K2 333 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 TMEM30BQ3MIR4 351 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 REEP3Q6NUK4 255 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 C8orf74Q6P047 294 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 ULK3Q6PHR2 472 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 SH2D6Q7Z4S9 175 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 VMO1Q7Z5L0 202 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 PNKDQ8N490 385 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 ZIC4Q8N9L1 334 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 INO80EQ8NBZ0 244 aaPredicted RBP3.3□□□□□ -1.88
LINC00540-201ENST00000611481 OR4X2Q8NGF9 303 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 GPR119Q8TDV5 335 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NPRL2Q8WTW4 380 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF681Q96N22 645 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 SERPINB12Q96P63 405 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 PITX2Q99697 317 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 ARHGDIGQ99819 225 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NABP2Q9BQ15 211 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 TMEM246Q9BRR3 403 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 KIFC1Q9BW19 673 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 GOLPH3Q9H4A6 298 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NHEJ1Q9H9Q4 299 aaPredicted RBP3.3□□□□□ -1.88
LINC00540-201ENST00000611481 NDE1Q9NXR1 346 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 ENPP5Q9UJA9 477 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 CBY1Q9Y3M2 126 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 KPTNQ9Y664 436 aa3.3□□□□□ -1.88
LINC00540-201ENST00000611481 FAT1Q14517 4588 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 RAB29O14966 203 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 AIREO43918 545 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 OR10H3O60404 316 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF189O75820 626 aaPredicted RBP3.29□□□□□ -1.88
LINC00540-201ENST00000611481 CCNB2O95067 398 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 RAB36O95755 333 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 IGHV3-13P01766 116 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 GLAP06280 429 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 GATA1P15976 413 aaPredicted RBP3.29□□□□□ -1.88
LINC00540-201ENST00000611481 PAX6P26367 422 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 NTSP30990 170 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 MYCNOSP40205 109 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ID1P41134 155 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 HOXA1P49639 335 aaPredicted RBP3.29□□□□□ -1.88
LINC00540-201ENST00000611481 P2RX1P51575 399 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ERVK-25P63136 954 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 QPRTQ15274 297 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 LRRC75BQ2VPJ9 315 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 MOGAT2Q3SYC2 334 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 LY6G6FQ5SQ64 297 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 C10orf99Q6UWK7 81 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 LYPD2Q6UXB3 125 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ASCL4Q6XD76 172 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 APRG1Q8IVJ8 170 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 JAGN1Q8N5M9 183 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 OR5T2Q8NGG2 359 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 OR52I1Q8NGK6 324 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 OR13A1Q8NGR1 328 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF519Q8TB69 540 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 PLPPR1Q8TBJ4 325 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 C10orf82Q8WW14 230 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 IL1F10Q8WWZ1 152 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 STMN2Q93045 179 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF75AQ96N20 296 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 P2RX4Q99571 388 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 SH3GL1Q99961 368 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 ZC4H2Q9NQZ6 224 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 B3GNT2Q9NY97 397 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 NKIRAS1Q9NYS0 192 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 EIF3KQ9UBQ5 218 aaKnown RBP3.29□□□□□ -1.88
LINC00540-201ENST00000611481 EXOGQ9Y2C4 368 aaKnown RBP3.29□□□□□ -1.88
LINC00540-201ENST00000611481 PPP2R2CQ9Y2T4 447 aa3.29□□□□□ -1.88
LINC00540-201ENST00000611481 TRBV9A0A0B4J1U6 114 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 IQCMA0A1B0GVH7 501 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 MEX3AA1L020 520 aaKnown RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 C16orf90A8MZG2 172 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 RGS16O15492 202 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms