RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ATXN7L3Q14CW9 347 aaPredicted RBP12.91□□□□□ -0.34
UPF1-206ENST00000598471 ZMYND11Q15326 602 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 GRK1Q15835 563 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 ACTBL2Q562R1 376 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 MZT2BQ6NZ67 158 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 DCDC5Q6ZRR9 648 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 MOB1BQ7L9L4 216 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 HOGA1Q86XE5 327 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 POC5Q8NA72 575 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 TMEM229BQ8NBD8 167 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 TMEM185AQ8NFB2 350 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 DYRK2Q92630 601 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 GAFA1Q96PS6 74 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 CCL13Q99616 98 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 HDHD3Q9BSH5 251 aaPredicted RBP12.91□□□□□ -0.34
UPF1-206ENST00000598471 ZNF286AQ9HBT8 521 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 TMEM165Q9HC07 324 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 METRNQ9UJH8 293 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 ANAPC10Q9UM13 185 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 MGAT4AQ9UM21 535 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 PTPN13Q12923 2485 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 HRNRQ86YZ3 2850 aaPredicted RBP12.91□□□□□ -0.34
UPF1-206ENST00000598471 LINC00854A0A1B0GVQ3 168 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 K7N7A8 449 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 TMPRSS2O15393 492 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 ADAM20O43506 726 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 NAPSAO96009 420 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 TBPP20226 339 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 GPR6P46095 362 aaPredicted RBP12.9□□□□□ -0.34
UPF1-206ENST00000598471 ASAH1Q13510 395 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 KLF9Q13886 244 aaPredicted RBP12.9□□□□□ -0.34
UPF1-206ENST00000598471 SLC35E4Q6ICL7 350 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 ZNF497Q6ZNH5 498 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 C17orf107Q6ZR85 190 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 GDPD3Q7L5L3 318 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 SPICQ8N5J4 248 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 BEST4Q8NFU0 473 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 OR4S1Q8NGB4 309 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 TMEM246Q9BRR3 403 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 ST6GALNAC5Q9BVH7 336 aa12.9□□□□□ -0.34
UPF1-206ENST00000598471 TRBV6-6A0A0A6YYG2 114 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 KIR2DS1A0A191URI9 304 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 NAP1L6A6NFF2 107 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 ZNF736B4DX44 427 aaPredicted RBP12.89□□□□□ -0.35
UPF1-206ENST00000598471 NDUFB3O43676 98 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 NDUFS7O75251 213 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 IGHV4-39P01824 125 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 TFF1P04155 84 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 TK1P04183 234 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 AKAIN1P0CW23 69 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 NAT1P18440 290 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 KIR2DS4P43632 304 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 PDLIM4P50479 330 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 ATP5J2P56134 94 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 TAS2R46P59540 309 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 ARPC4P59998 168 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 KRTAP10-9P60411 292 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 PAX5Q02548 391 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 KIR2DS1Q14954 304 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 SRSF7Q16629 238 aaKnown RBP eCLIP12.89□□□□□ -0.35
UPF1-206ENST00000598471 RGS21Q2M5E4 152 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 TMEM155Q4W5P6 130 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 KRBOX4Q5JUW0 171 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 AVPI1Q5T686 147 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 GVQW1Q8N7I0 195 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 FAM216BQ8N7L0 139 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 ZNRF1Q8ND25 227 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 PLPPR1Q8TBJ4 325 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 ING3Q9NXR8 418 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 KAAG1Q9UBP8 84 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 TRAPPC2LQ9UL33 140 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 MAB21L2Q9Y586 359 aa12.89□□□□□ -0.35
UPF1-206ENST00000598471 LYRM1O43325 122 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 SSX4O60224 188 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 RAB3DO95716 219 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 FCER2P06734 321 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 PAX1P15863 534 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 HLA-DMAP28067 261 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 EDDM3AQ14507 147 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 MEF2DQ14814 521 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 CHRFAM7AQ494W8 412 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 LRRC10Q5BKY1 277 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 RNASE10Q5GAN6 216 aaKnown RBP12.88□□□□□ -0.35
UPF1-206ENST00000598471 RSBN1Q5VWQ0 802 aaPredicted RBP12.88□□□□□ -0.35
UPF1-206ENST00000598471 STEAP1BQ6NZ63 245 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 NLRC3Q7RTR2 1065 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 GAPTQ8N292 157 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 OR5H2Q8NGV7 314 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 OR4K15Q8NH41 348 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 MRPL30Q8TCC3 161 aaKnown RBP12.88□□□□□ -0.35
UPF1-206ENST00000598471 CYYR1Q96J86 154 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 SHARPINQ9H0F6 387 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 Q9N2K0 584 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 MIOXQ9UGB7 285 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 ZNF230Q9UIE0 474 aaPredicted RBP12.88□□□□□ -0.35
UPF1-206ENST00000598471 TBC1D24Q9ULP9 559 aa12.88□□□□□ -0.35
UPF1-206ENST00000598471 MEIKINA0A087WXM9 373 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 TNFRSF13BO14836 293 aaPredicted RBP12.87□□□□□ -0.35
UPF1-206ENST00000598471 PTTG1O95997 202 aa12.87□□□□□ -0.35
UPF1-206ENST00000598471 MT-ND4P03905 459 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms