RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LYNX1G3V0Z9 82 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 SIGLEC5O15389 551 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 TMPRSS2O15393 492 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 LYRM1O43325 122 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 NDUFB3O43676 98 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 PSPNO60542 156 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF737O75373 536 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 NAPSAO96009 420 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 MT-ND4P03905 459 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 TK1P04183 234 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 FCGR3AP08637 254 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 LYNX1P0DP58 116 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 KIR2DS4P43632 304 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 OR3A1P47881 315 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 ARPC4P59998 168 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 PAX5Q02548 391 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 KIR2DS1Q14954 304 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 ZMYND11Q15326 602 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 CARTPTQ16568 116 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM155Q4W5P6 130 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 LRRC10Q5BKY1 277 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 KRBOX4Q5JUW0 171 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF787Q6DD87 383 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 STEAP1BQ6NZ63 245 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF497Q6ZNH5 498 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 Q6ZS49 121 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 SPICQ8N5J4 248 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 MINDY2Q8NBR6 621 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 BEST4Q8NFU0 473 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 OR4S1Q8NGB4 309 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 DCAF16Q9NXF7 216 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 KAAG1Q9UBP8 84 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 ANAPC10Q9UM13 185 aa12.74□□□□□ -0.37
TRIM28-209ENST00000597423 LRRK2Q5S007 2527 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 PKDREJQ9NTG1 2253 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 TRDCB7Z8K6 153 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 DISC1C4P0D8 188 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 ADAM20O43506 726 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 RAB3DO95716 219 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 PTTG1O95997 202 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 CTXN2P0C2S0 81 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 GZMHP20718 246 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 HLA-DMAP28067 261 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 ERP29P30040 261 aaKnown RBP12.73□□□□□ -0.37
TRIM28-209ENST00000597423 GPR6P46095 362 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-209ENST00000597423 PDLIM4P50479 330 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 ATXN7L3Q14CW9 347 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-209ENST00000597423 RNASE10Q5GAN6 216 aaKnown RBP12.73□□□□□ -0.37
TRIM28-209ENST00000597423 C6orf183Q5T699 404 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 TRAT1Q6PIZ9 186 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 C17orf107Q6ZR85 190 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 NLRC3Q7RTR2 1065 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 RTN4RL2Q86UN3 420 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM17Q86X19 198 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 GAPTQ8N292 157 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 GVQW1Q8N7I0 195 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF565Q8N9K5 539 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM185AQ8NFB2 350 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 OR5H2Q8NGV7 314 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 GAFA1Q96PS6 74 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 TMEM246Q9BRR3 403 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 SHARPINQ9H0F6 387 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 HRASLSQ9HDD0 168 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 Q9N2K0 584 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 RAB9BQ9NP90 201 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 MCUBQ9NWR8 336 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 MIOXQ9UGB7 285 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF230Q9UIE0 474 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-209ENST00000597423 ANXA10Q9UJ72 324 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 PCDHB10Q9UN67 800 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 MAB21L2Q9Y586 359 aa12.73□□□□□ -0.37
TRIM28-209ENST00000597423 MEIKINA0A087WXM9 373 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 FAM240BA0A1B0GVZ2 78 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 TNFRSF13BO14836 293 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-209ENST00000597423 GPR37O15354 613 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 PLA2G10O15496 165 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 IGHV2-70P01814 119 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 CD74P04233 296 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 CD3DP04234 171 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 PAX1P15863 534 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 ATP5J2P56134 94 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 DSCR9P59020 149 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 HOXA4Q00056 320 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-209ENST00000597423 AESQ08117 197 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 ZNF554Q86TJ5 538 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 ZNRF1Q8ND25 227 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 OR5AP2Q8NGF4 316 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 ENKURQ8TC29 256 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 MRPL30Q8TCC3 161 aaKnown RBP12.72□□□□□ -0.37
TRIM28-209ENST00000597423 DYRK2Q92630 601 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 HDHD3Q9BSH5 251 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-209ENST00000597423 NECAP2Q9NVZ3 263 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 OR6C3Q9NZP0 311 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 COPZ2Q9P299 210 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 LPAR3Q9UBY5 353 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 SCP2D1Q9UJQ7 156 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 TBC1D24Q9ULP9 559 aa12.72□□□□□ -0.37
TRIM28-209ENST00000597423 ARFGEF3Q5TH69 2177 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 DYSFO75923 2080 aa12.71□□□□□ -0.37
TRIM28-209ENST00000597423 NDUFS8O00217 210 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms