RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IGKV3-15P01624 115 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 SCTP09683 121 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 CBR1P16152 277 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 KCNJ3P48549 501 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 ERVS71-1P61550 626 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 FOXF2Q12947 444 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 BAP18Q8IXM2 172 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 MRPL30Q8TCC3 161 aaKnown RBP16.76■□□□□ 0.27
CLIP3-206ENST00000593074 DKK4Q9UBT3 224 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 CFAP47Q6ZTR5 3102 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 H7C1Q1 480 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 TUSC2O75896 110 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 DIRAS3O95661 229 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 UCP2P55851 309 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 LDLRAD3Q86YD5 345 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 SLC25A40Q8TBP6 338 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 LINC00052Q96N35 136 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 NARFLQ9H6Q4 476 aa16.76■□□□□ 0.27
CLIP3-206ENST00000593074 TEX46H3BTG2 121 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 CTXN2P0C2S0 81 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 GNRHRP30968 328 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 RND3P61587 244 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 ZNF880Q6PDB4 577 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 Q8IYB0 196 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 LGI3Q8N145 548 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 WDR31Q8NA23 367 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 ADAT1Q9BUB4 502 aaKnown RBP16.75■□□□□ 0.27
CLIP3-206ENST00000593074 CEP250Q9BV73 2442 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 ESPL1Q14674 2120 aa16.75■□□□□ 0.27
CLIP3-206ENST00000593074 IGKV1-6A0A0C4DH72 117 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 KRBOX1C9JBD0 128 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 BET1O15155 118 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 HKR1P10072 659 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 SELEP16581 610 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 HOXC12P31275 282 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 ERVK11-1P61568 191 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 IGFBP7Q16270 282 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 LYZL2Q7Z4W2 148 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 RBMXL3Q8N7X1 1067 aaKnown RBP16.74■□□□□ 0.27
CLIP3-206ENST00000593074 OR1J1Q8NGS3 322 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 POLDIP2Q9Y2S7 368 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 SPENQ96T58 3664 aaKnown RBP16.74■□□□□ 0.27
CLIP3-206ENST00000593074 MPPED1O15442 326 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 SLC34A2O95436 690 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 SMCO1Q147U7 214 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 Q6P435 159 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 C20orf204Q6ZNR8 217 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 C5orf24Q7Z6I8 188 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 FOXRED2Q8IWF2 684 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 SCCPDHQ8NBX0 429 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 TP53RKQ96S44 253 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 PROCRQ9UNN8 238 aa16.74■□□□□ 0.27
CLIP3-206ENST00000593074 K7EM74 188 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 HS3ST1O14792 307 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 TAAR5O14804 337 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 PHF1O43189 567 aaPredicted RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 FGF16O43320 207 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 CRYABP02511 175 aaKnown RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 SRPXP78539 464 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 FOXC1Q12948 553 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 PSG7Q13046 419 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 LHFPL5Q8TAF8 219 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 RDH5Q92781 318 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 FRYQ5TBA9 3013 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 C3orf85A0A1B0GTC6 90 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 MBD3L4A6NDZ8 208 aaPredicted RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 MBD3L3A6NE82 208 aaPredicted RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 MBD3L5A6NJ08 208 aaPredicted RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 TNFSF13O75888 250 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 ZNF154Q13106 437 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 ALKBH6Q3KRA9 238 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 ZNF610Q8N9Z0 462 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 MBD3L2Q8NHZ7 208 aaPredicted RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 STARD4Q96DR4 205 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 NRIP2Q9BQI9 281 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 TMEM100Q9NV29 134 aa16.73■□□□□ 0.27
CLIP3-206ENST00000593074 FBXO9Q9UK97 447 aaPredicted RBP16.73■□□□□ 0.27
CLIP3-206ENST00000593074 MKRN2OSH3BPM6 223 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 MBPP02686 304 aaPredicted RBP16.72■□□□□ 0.27
CLIP3-206ENST00000593074 PGA5P0DJD9 388 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 PCSK4Q6UW60 755 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 OR4A4PQ8NGN8 299 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 KLF14Q8TD94 323 aaPredicted RBP16.72■□□□□ 0.27
CLIP3-206ENST00000593074 SECTM1Q8WVN6 248 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 TMEM222Q9H0R3 208 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 TREM2Q9NZC2 230 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 TMED3Q9Y3Q3 217 aa16.72■□□□□ 0.27
CLIP3-206ENST00000593074 PRRC2CQ9Y520 2896 aaKnown RBP16.72■□□□□ 0.27
CLIP3-206ENST00000593074 IGKV1D-13A0A0B4J2D9 117 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 TMEM210A6NLX4 147 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 C3orf80F5H4A9 247 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 K7EPK0 472 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 GPR31O00270 319 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 DEGS1O15121 323 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 IGKV1-13P0DP09 117 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 GLI4P10075 376 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 RPL12P30050 165 aaKnown RBP16.71■□□□□ 0.27
CLIP3-206ENST00000593074 HLA-DRB3P79483 266 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 ZNF818PQ6ZRF7 136 aa16.71■□□□□ 0.27
CLIP3-206ENST00000593074 SEM1Q6ZVN7 128 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms