RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 RIBC2Q9H4K1 309 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 ZCCHC4Q9H5U6 513 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 NEK6Q9HC98 313 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 ZFP57Q9NU63 452 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 OAZ3Q9UMX2 235 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 MYRFQ9Y2G1 1151 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 MOB4Q9Y3A3 225 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 HSPE1-MOB4S4R3N1 261 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 COL7A1Q02388 2944 aa8.4□□□□□ -1.06
RFFL-209ENST00000581265 NPIPB11E5RHQ5 1161 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 J3QR06 171 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 SNRNP70P08621 437 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 RPSAP08865 295 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 TMEM225BP0DP42 221 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 NFYBP25208 207 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 C21orf33P30042 268 aaPredicted RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 HOXD3P31249 432 aaPredicted RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 THBS3P49746 956 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 ZP1P60852 638 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 SNRPGP62308 76 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 RPL23AP62750 156 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 PAX5Q02548 391 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 ALKBH1Q13686 389 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 ATXN7L3Q14CW9 347 aaPredicted RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 KISS1Q15726 138 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 MEDAGQ5VYS4 303 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 ETV3LQ6ZN32 361 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 SLC16A12Q6ZSM3 486 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 ZNF329Q86UD4 541 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 SERPINA12Q8IW75 414 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 PARP16Q8N5Y8 322 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 OR51D1Q8NGF3 324 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 OR5D14Q8NGL3 314 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 HAVCR2Q8TDQ0 301 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 CHPT1Q8WUD6 406 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 RPEQ96AT9 228 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 RNFT2Q96EX2 444 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 PELI1Q96FA3 418 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 MCRIP2Q9BUT9 160 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 BARHL1Q9BZE3 327 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 PPIL3Q9H2H8 161 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 IMPAD1Q9NX62 359 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 ING3Q9NXR8 418 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 PSG11Q9UQ72 335 aa8.39□□□□□ -1.07
RFFL-209ENST00000581265 EXOGQ9Y2C4 368 aaKnown RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 AMMECR1Q9Y4X0 333 aaPredicted RBP8.39□□□□□ -1.07
RFFL-209ENST00000581265 MEIKINA0A087WXM9 373 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 TRAV24A0A0B4J272 114 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 A0A1W2PPI3 338 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 E9PQ18 207 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 H0YJX3 145 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 J3QLW9 94 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 FGF16O43320 207 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 SULT1B1O43704 296 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 ZNF19P17023 458 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 MYCNOSP40205 109 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 MTNR1BP49286 362 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 RASSF2P50749 326 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 RAB7AP51149 207 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 MADCAM1Q13477 382 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 C1orf146Q5VVC0 180 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 OR2W3Q7Z3T1 314 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 COMMD1Q8N668 190 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 DRAM1Q8N682 238 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 C5orf56Q8N8D9 126 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 Q8NFD4 153 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 PXT1Q8NFP0 134 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 OR10A7Q8NGE5 316 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 OR13A1Q8NGR1 328 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 OR56B4Q8NH76 319 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 CNIH3Q8TBE1 160 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 DPF1Q92782 380 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 TOMM40LQ969M1 308 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 P2RX4Q99571 388 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 B9D2Q9BPU9 175 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 CALYQ9NYX4 217 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 KIF25Q9UIL4 384 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 BIRC6Q9NR09 4857 aa8.38□□□□□ -1.07
RFFL-209ENST00000581265 SNTNA6NMZ2 147 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 ZFPL1O95159 310 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 IL1AP01583 271 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 IGHG2P01859 326 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 ALPLP05186 524 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 HCKP08631 526 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 KCNJ3P48549 501 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 DCTN2Q13561 401 aaKnown RBP8.37□□□□□ -1.07
RFFL-209ENST00000581265 EBI3Q14213 229 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 DIAPH2-AS1Q14236 149 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 GALEQ14376 348 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 HES1Q14469 280 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 PAN3Q58A45 887 aaKnown RBP8.37□□□□□ -1.07
RFFL-209ENST00000581265 ZNF691Q5VV52 312 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 ASCL4Q6XD76 172 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 OR8H3Q8N146 312 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 SYS1Q8N2H4 156 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 MRPL48Q96GC5 212 aaKnown RBP8.37□□□□□ -1.07
RFFL-209ENST00000581265 C4orf36Q96KX1 117 aa8.37□□□□□ -1.07
RFFL-209ENST00000581265 NOL4LQ96MY1 436 aaPredicted RBP8.37□□□□□ -1.07
RFFL-209ENST00000581265 MYCBPQ99417 103 aaPredicted RBP8.37□□□□□ -1.07
RFFL-209ENST00000581265 ZNF649Q9BS31 505 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms