RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 FAM90A14PP0C7W9 464 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 FAM90A24PP0C7X0 464 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 LIMS3P0CW19 117 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 LIMS4P0CW20 117 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 C21orf33P30042 268 aaPredicted RBP11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 MNDAP41218 407 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 VDAC2P45880 294 aaPredicted RBP11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 BLCAPP62952 87 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 CNIH3Q8TBE1 160 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 KIRREL1Q96J84 757 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 SLC29A1Q99808 456 aa11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 ISG20L2Q9H9L3 353 aaKnown RBP11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 AMMECR1Q9Y4X0 333 aaPredicted RBP11.6□□□□□ -0.55
SMARCE1-216ENST00000580419 TOR1AO14656 332 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 ZNF780AO75290 641 aaPredicted RBP11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 C17orf58Q2M2W7 97 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 Q3ZCU0 254 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 TPTE2P1Q5T6R2 138 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 TMPRSS11AQ6ZMR5 421 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 CDH26Q8IXH8 852 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 C8orf31Q8N9H6 132 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 APH1BQ8WW43 257 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 CAPSLQ8WWF8 208 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 RFT1Q96AA3 541 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 SPACA5Q96QH8 159 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 PDCD1LG2Q9BQ51 273 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 MMP28Q9H239 520 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 TMEM138Q9NPI0 162 aa11.59□□□□□ -0.55
SMARCE1-216ENST00000580419 TRAV24A0A0B4J272 114 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 E9PI62 339 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 H0YJX3 145 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 OGG1O15527 345 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 IL1AP01583 271 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 FAM106CPP0CH98 169 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 CD28P10747 220 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 GZMHP20718 246 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 SLC6A1P30531 599 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 RAB7AP51149 207 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 HABP2Q14520 560 aaPredicted RBP11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 PLA1AQ53H76 456 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 PRAMEF5Q5TYX0 476 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 OR8H3Q8N146 312 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 OR52M1Q8NGK5 317 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 OR5D18Q8NGL1 313 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 TSEN15Q8WW01 171 aaKnown RBP11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 STMN2Q93045 179 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 CITED2Q99967 270 aaPredicted RBP11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 ZNF286AQ9HBT8 521 aa11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 SMPD3Q9NY59 655 aaPredicted RBP11.58□□□□□ -0.56
SMARCE1-216ENST00000580419 MEX3AA1L020 520 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 G3V4G9 280 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 GABRPO00591 440 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 FGF16O43320 207 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 WBP4O75554 376 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 DUS4LO95620 317 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 AMY1AP04745 511 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 AMY2AP04746 511 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 MED21Q13503 144 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 GPR176Q14439 515 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 ZSCAN26Q16670 478 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 MPV17LQ2QL34 196 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 TMEM30BQ3MIR4 351 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 PAN3Q58A45 887 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 RSBN1Q5VWQ0 802 aaPredicted RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 Q6ZS46 218 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 RNF144BQ7Z419 303 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 PACRGLQ8N7B6 248 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 ZNF555Q8NEP9 628 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 OR5AU1Q8NGC0 362 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 OR52N1Q8NH53 320 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 TMEM106AQ96A25 262 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 SMIM19Q96E16 107 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 MRPS24Q96EL2 167 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 SLC25A33Q9BSK2 321 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 AMBNQ9NP70 447 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 BABAM2Q9NXR7 383 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 CALYQ9NYX4 217 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 DIMT1Q9UNQ2 313 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 ZNF281Q9Y2X9 895 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 EXOSC1Q9Y3B2 195 aaKnown RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 TSSC4Q9Y5U2 329 aaPredicted RBP11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 HSPE1-MOB4S4R3N1 261 aa11.57□□□□□ -0.56
SMARCE1-216ENST00000580419 J3QR06 171 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 EBAG9O00559 213 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 CD1AP06126 327 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 GDNFP39905 211 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 SNU13P55769 128 aaKnown RBP11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 MADCAM1Q13477 382 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 EBI3Q14213 229 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 RSU1Q15404 277 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 TTC23Q5W5X9 447 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 C11orf44Q8N8P7 122 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 TNFAIP8L1Q8WVP5 186 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 RGP1Q92546 391 aaPredicted RBP11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 THRSPQ92748 146 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 R3HDM4Q96D70 268 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 SPACA1Q9HBV2 294 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 NECAP2Q9NVZ3 263 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 AASSQ9UDR5 926 aa11.56□□□□□ -0.56
SMARCE1-216ENST00000580419 MEIKINA0A087WXM9 373 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms