RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 IL34Q6ZMJ4 242 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 DPPA2Q7Z7J5 298 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 OR1K1Q8NGR3 316 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 OR5P3Q8WZ94 311 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 NKX6-2Q9C056 277 aaPredicted RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 DEFB127Q9H1M4 99 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 TMEM9BQ9NQ34 198 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 IL36RNQ9UBH0 155 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 TNRC6AQ8NDV7 1962 aaKnown RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 TRIM77I1YAP6 450 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 MPPED1O15442 326 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 SYNGR1O43759 233 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 ADCYAP1P18509 176 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 GNRHRP30968 328 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 KCNJ3P48549 501 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 SULT1A2P50226 295 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 SRSF3P84103 164 aaKnown RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 CLN3Q13286 438 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 TGIF1Q15583 401 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 C10orf91Q5T1B1 145 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 ATP1A1-AS1Q5TC04 95 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 FBXW9Q5XUX1 488 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 LDLRAD3Q86YD5 345 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 FAM185AQ8N0U4 392 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 BCL2L2Q92843 193 aaPredicted RBP8.63□□□□□ -1.03
VPS53-220ENST00000576149 TP53RKQ96S44 253 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 ZFP57Q9NU63 452 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 TMED3Q9Y3Q3 217 aa8.63□□□□□ -1.03
VPS53-220ENST00000576149 C3orf85A0A1B0GTC6 90 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 ANKRD30BLA7E2S9 258 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 LILRA1O75019 489 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 DIRAS3O95661 229 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 TK1P04183 234 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 SCTP09683 121 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 RNFT1Q5M7Z0 435 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 HAGHLQ6PII5 290 aaPredicted RBP8.62□□□□□ -1.03
VPS53-220ENST00000576149 UBAC2Q8NBM4 344 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 OR52M1Q8NGK5 317 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 ERGIC1Q969X5 290 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 PLK3Q9H4B4 646 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 SPRR3Q9UBC9 169 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 MPC1Q9Y5U8 109 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 MED13Q9UHV7 2174 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 TRGV5A0A0B4J1U4 118 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 ARGFXA6NJG6 315 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 SLC22A20A6NK97 555 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 IL13RA2Q14627 380 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 HERPUD1Q15011 391 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 TSC22D1Q15714 1073 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 ZNF766Q5HY98 468 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 GPR157Q5UAW9 335 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 FBXW12Q6X9E4 464 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 C5orf24Q7Z6I8 188 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 LINC00596Q86U02 117 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 SLC35G3Q8N808 338 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 NANOS1Q8WY41 292 aaKnown RBP8.62□□□□□ -1.03
VPS53-220ENST00000576149 GTF3AQ92664 365 aaKnown RBP8.62□□□□□ -1.03
VPS53-220ENST00000576149 TSNAXQ99598 290 aaKnown RBP8.62□□□□□ -1.03
VPS53-220ENST00000576149 SMIM3Q9BZL3 60 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 TMEM222Q9H0R3 208 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 HRH4Q9H3N8 390 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 GP6Q9HCN6 339 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 PLA2G2EQ9NZK7 142 aa8.62□□□□□ -1.03
VPS53-220ENST00000576149 ZNF407Q9C0G0 2248 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 KIR2DS1A0A191URI9 304 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 OR5B21A6NL26 309 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 TRDCB7Z8K6 153 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ST8SIA3O43173 380 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 GPR137BO60478 399 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 FBXO24O75426 580 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 MED6O75586 246 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 TUSC2O75896 110 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 KIR2DS4P43632 304 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 LPAR6P43657 344 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 P2RY1P47900 373 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 CAV2P51636 162 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 RND3P61587 244 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 GNG3P63215 75 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 SRPXP78539 464 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ARG2P78540 354 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 KIR2DS1Q14954 304 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 MDP1Q86V88 176 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ZNF573Q86YE8 665 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 SVBPQ8N300 66 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 OR4D5Q8NGN0 318 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ANAPC16Q96DE5 110 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 TMEM56Q96MV1 263 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 ARV1Q9H2C2 271 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 RIMS4Q9H426 269 aaPredicted RBP8.61□□□□□ -1.03
VPS53-220ENST00000576149 ZDHHC11Q9H8X9 412 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 SPACA1Q9HBV2 294 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 LHX6Q9UPM6 363 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 CARHSP1Q9Y2V2 147 aaKnown RBP8.61□□□□□ -1.03
VPS53-220ENST00000576149 ATP23Q9Y6H3 246 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 TMEM56-RWDD3S4R434 201 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 SHANK1Q9Y566 2161 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 FAM74A7A6NL05 159 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 GPR31O00270 319 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 HSPB6O14558 160 aa8.61□□□□□ -1.03
VPS53-220ENST00000576149 CTXN2P0C2S0 81 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms