RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR6C3Q9NZP0 311 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 TPRKBQ9Y3C4 175 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 A0A0G2JK05 382 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 TRBV5-5A0A0J9YX44 114 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ODAMA1E959 279 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 PTGES3LE9PB15 166 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 SLC33A1O00400 549 aaPredicted RBP6.58□□□□□ -1.36
VPS53-214ENST00000572607 HSPB6O14558 160 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 LALBAP00709 142 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 CSN2P05814 226 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 CDK1P06493 297 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 CELP19835 753 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 C21orf33P30042 268 aaPredicted RBP6.58□□□□□ -1.36
VPS53-214ENST00000572607 PTGFRP43088 359 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR3A4PP47883 348 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 KCNJ3P48549 501 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ARHGDIBP52566 201 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 AQP4P55087 323 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 DLX6P56179 175 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 BDH1Q02338 343 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 AESQ08117 197 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 GPR176Q14439 515 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ATXN7L3Q14CW9 347 aaPredicted RBP6.58□□□□□ -1.36
VPS53-214ENST00000572607 FAM189A2Q15884 450 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 LY6EQ16553 131 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 MINOS1Q5TGZ0 78 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ZNF626Q68DY1 528 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ASPHD2Q6ICH7 369 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ZNF529Q6P280 563 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 RNF144BQ7Z419 303 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 LINC00596Q86U02 117 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 RTN4RL2Q86UN3 420 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OSR2Q8N2R0 312 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 JAGN1Q8N5M9 183 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR11H6Q8NGC7 330 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR4D6Q8NGJ1 314 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR4C13Q8NGP0 309 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR13C5Q8NGS8 318 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR10K1Q8NGX5 313 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 TAF15Q92804 592 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS53-214ENST00000572607 MALSU1Q96EH3 234 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 PGLYRP3Q96LB9 341 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 OR14A2Q96R54 314 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ZNF184Q99676 751 aaPredicted RBP6.58□□□□□ -1.36
VPS53-214ENST00000572607 CLEC7AQ9BXN2 247 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 BARHL1Q9BZE3 327 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 MEGF9Q9H1U4 602 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 TMEM133Q9H2Q1 129 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 TAS2R3Q9NYW6 316 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 NKX1-2Q9UD57 310 aaPredicted RBP6.58□□□□□ -1.36
VPS53-214ENST00000572607 PITPNC1Q9UKF7 332 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 ST3GAL6Q9Y274 331 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 SIRT4Q9Y6E7 314 aaPredicted RBP6.58□□□□□ -1.36
VPS53-214ENST00000572607 MINOS1-NBL1R4GNA1 71 aa6.58□□□□□ -1.36
VPS53-214ENST00000572607 VWFP04275 2813 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 MEIKINA0A087WXM9 373 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 IGHV2-26A0A0B4J1V2 119 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 A0A1W2PPK0 400 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 MEGF11A6BM72 1044 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 ZNF729A6NN14 1252 aaPredicted RBP6.57□□□□□ -1.36
VPS53-214ENST00000572607 ODF3BA8MYP8 253 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 F2RL2O00254 374 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 TOR1AO14656 332 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 GPX5O75715 221 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 OR7C1O76099 320 aaPredicted RBP6.57□□□□□ -1.36
VPS53-214ENST00000572607 CDRT1O95170 752 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 CD1AP06126 327 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 GTF2F2P13984 249 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 IGFBP3P17936 291 aaPredicted RBP6.57□□□□□ -1.36
VPS53-214ENST00000572607 SERPINA2P20848 420 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 CDK2P24941 298 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 HTR1DP28221 377 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 GABRA5P31644 462 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 GLP1RP43220 463 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 GLIPR1P48060 266 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 HSPA13P48723 471 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 MED22Q15528 200 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 SSX2Q16385 188 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 PLA1AQ53H76 456 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 C6orf141Q5SZD1 244 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 RNLSQ5VYX0 342 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 LAIR2Q6ISS4 152 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 Q6P435 159 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 TCF23Q7RTU1 214 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 LHFPL4Q7Z7J7 247 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 MS4A15Q8N5U1 240 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 NANOGP1Q8N7R0 232 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 NKAIN3Q8N8D7 197 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 ZNF565Q8N9K5 539 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 ZNF485Q8NCK3 441 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 OR51T1Q8NGJ9 327 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 ZNF596Q8TC21 504 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 NEK7Q8TDX7 302 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 C17orf50Q8WW18 174 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 CORO2AQ92828 525 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 CREB3L1Q96BA8 519 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 NPFFR1Q9GZQ6 430 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 FKBP14Q9NWM8 211 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 IL36GQ9NZH8 169 aa6.57□□□□□ -1.36
VPS53-214ENST00000572607 FOXJ3Q9UPW0 622 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms