RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TREML4Q6UXN2 200 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 OR4P4Q8NGL7 312 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 OR4C13Q8NGP0 309 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 ZNF184Q99676 751 aaPredicted RBP16.38■□□□□ 0.21
CLK3-225ENST00000569063 PPIL3Q9H2H8 161 aaKnown RBP16.38■□□□□ 0.21
CLK3-225ENST00000569063 IFT22Q9H7X7 185 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 ABCB10Q9NRK6 738 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 PAK1IP1Q9NWT1 392 aaPredicted RBP16.38■□□□□ 0.21
CLK3-225ENST00000569063 ING3Q9NXR8 418 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 ING4Q9UNL4 249 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 TCF19Q9Y242 345 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 TRAV8-7A0A075B6U6 113 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 ZNF729A6NN14 1252 aaPredicted RBP16.37■□□□□ 0.21
CLK3-225ENST00000569063 HSPB6O14558 160 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 CHST1O43916 411 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 CGB3P0DN86 165 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 CGB7P0DN87 165 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 CELP19835 753 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 HTR1DP28221 377 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 CD34P28906 385 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 KCNJ3P48549 501 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 DOC2BQ14184 412 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 C17orf58Q2M2W7 97 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 PLA1AQ53H76 456 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 BAIAP2L2Q6UXY1 529 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 DTX3Q8N9I9 347 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 ZNF565Q8N9K5 539 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 OR4D6Q8NGJ1 314 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 ZNF596Q8TC21 504 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 NRG4Q8WWG1 115 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 OR14A2Q96R54 314 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 BARHL1Q9BZE3 327 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 NPFFR1Q9GZQ6 430 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 FOXJ3Q9UPW0 622 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 ST3GAL6Q9Y274 331 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 ERGIC3Q9Y282 383 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 HILPDAQ9Y5L2 63 aa16.37■□□□□ 0.21
CLK3-225ENST00000569063 A0A087X0M5 115 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 PNMA8CA0A1B0GUJ8 204 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 A0A1B0GX30 115 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 A6NDX4 124 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 TIMM23O14925 209 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 ZNF780AO75290 641 aaPredicted RBP16.36■□□□□ 0.21
CLK3-225ENST00000569063 IGLV1-47P01700 117 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 CSTBP04080 98 aaKnown RBP16.36■□□□□ 0.21
CLK3-225ENST00000569063 CDK1P06493 297 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 GDNFP39905 211 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 RBM11P57052 281 aaKnown RBP16.36■□□□□ 0.21
CLK3-225ENST00000569063 BDH1Q02338 343 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 C6orf141Q5SZD1 244 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 C11orf88Q6PI97 169 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 CCBE1Q6UXH8 406 aaPredicted RBP16.36■□□□□ 0.21
CLK3-225ENST00000569063 LINC00596Q86U02 117 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 OSR2Q8N2R0 312 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 NDNFQ8TB73 568 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 DERL3Q96Q80 235 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 S100A13Q99584 98 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 TCF7L1Q9HCS4 588 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 PCDHB16Q9NRJ7 776 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 PITPNC1Q9UKF7 332 aa16.36■□□□□ 0.21
CLK3-225ENST00000569063 TRRAPQ9Y4A5 3859 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 KBTBD11-OT1A0A1B0GTJ5 212 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 MAGEA13PA6NCF6 341 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 EFNB2P52799 333 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 RSBN1Q5VWQ0 802 aaPredicted RBP16.35■□□□□ 0.21
CLK3-225ENST00000569063 CDH26Q8IXH8 852 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 LINC00574Q9H8X3 128 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 DPM3Q9P2X0 92 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 KIF25Q9UIL4 384 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 PKD1L1Q8TDX9 2849 aa16.35■□□□□ 0.21
CLK3-225ENST00000569063 MEIKINA0A087WXM9 373 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 A0A1W2PPK0 400 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 M0QZ24 198 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 SERPINA2P20848 420 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 AQP4P55087 323 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 GABPB1Q06547 395 aaPredicted RBP16.34■□□□□ 0.21
CLK3-225ENST00000569063 GPR176Q14439 515 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 MPV17LQ2QL34 196 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 SUMF2Q8NBJ7 301 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 OR2T6Q8NHC8 308 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 PLPPR1Q8TBJ4 325 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 THRSPQ92748 146 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 MYDGFQ969H8 173 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 DPCDQ9BVM2 203 aaPredicted RBP16.34■□□□□ 0.21
CLK3-225ENST00000569063 MND1Q9BWT6 205 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 ZNF286AQ9HBT8 521 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 SIGLEC9Q9Y336 463 aa16.34■□□□□ 0.21
CLK3-225ENST00000569063 FAM90A22PA8MWA6 464 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 PTGES3LE9PB15 166 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 GEMIN2O14893 280 aaKnown RBP16.33■□□□□ 0.2
CLK3-225ENST00000569063 PIN1P1O15428 100 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 OR7C1O76099 320 aaPredicted RBP16.33■□□□□ 0.2
CLK3-225ENST00000569063 GTF2F2P13984 249 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 JUNBP17275 347 aaPredicted RBP16.33■□□□□ 0.2
CLK3-225ENST00000569063 GLP1RP43220 463 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 PRRX1P54821 245 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 Q8N2B8 174 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 OR13A1Q8NGR1 328 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 CREB3L1Q96BA8 519 aa16.33■□□□□ 0.2
CLK3-225ENST00000569063 KIRREL1Q96J84 757 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms