RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CSN2P05814 226 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 EIF4EP06730 217 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A15PP0C7V4 464 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A14PP0C7W9 464 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF705DP0CH99 300 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF705BP0CI00 300 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 PGA4P0DJD7 388 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PGA5P0DJD9 388 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 CTSEP14091 401 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 HOXB9P17482 250 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 IGFBP2P18065 325 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PRKACGP22612 351 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ATP6V0CP27449 155 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 CCKBRP32239 447 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 CHI3L1P36222 383 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 MDH2P40926 338 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 LPAR6P43657 344 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 GLIPR1P48060 266 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 SULT1A2P50226 295 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 DUSP3P51452 185 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 LBX1P52954 281 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TMPRSS3P57727 454 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ARG2P78540 354 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 HIST1H1AQ02539 215 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 TMEM267Q0VDI3 215 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 EIF2B1Q14232 305 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 ENDOGQ14249 297 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 PSG5Q15238 335 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PRICKLE4Q2TBC4 344 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ACOT6Q3I5F7 207 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 ODF3L2Q3SX64 289 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ATP6AP1LQ52LC2 224 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF766Q5HY98 468 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ENTPD8Q5MY95 495 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 C1orf189Q5VU69 101 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 SUSD4Q5VX71 490 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ASPHD2Q6ICH7 369 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR2T5Q6IEZ7 315 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 RHBDD2Q6NTF9 364 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TNFAIP8L2Q6P589 184 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 Q6ZN92 141 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 GTF2H5Q6ZYL4 71 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 MEPCEQ7L2J0 689 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 H2BFWTQ7Z2G1 175 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 SCD5Q86SK9 330 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ACOT1Q86TX2 421 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 GKN2Q86XP6 184 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TMEM25Q86YD3 366 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TGIF2LYQ8IUE0 185 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF440Q8IYI8 595 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 SAXO1Q8IYX7 474 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF567Q8N184 647 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TMEM217Q8N7C4 229 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TCTEX1D1Q8N7M0 179 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ACOT4Q8N9L9 421 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 CLEC1AQ8NC01 280 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ADAD2Q8NCV1 583 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 LFNGQ8NES3 379 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR2T33Q8NG76 320 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR52I1Q8NGK6 324 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR10G4Q8NGN3 311 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR9G4Q8NGQ1 327 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR2T29Q8NH02 315 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR52I2Q8NH67 350 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 SCAMP5Q8TAC9 235 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TMEM170AQ8WVE7 144 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 SECTM1Q8WVN6 248 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 RXFP2Q8WXD0 754 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 GEMIN6Q8WXD5 167 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 RAB8BQ92930 207 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 APOBEC3DQ96AK3 386 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 ESAMQ96AP7 390 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 DNAJC19Q96DA6 116 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 MSI2Q96DH6 328 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 TM4SF19Q96DZ7 209 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 WDR34Q96EX3 536 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 IMP4Q96G21 291 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 SDSLQ96GA7 329 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 LINC00615Q96LM1 132 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZFP3Q96NJ6 502 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 MS4A10Q96PG2 267 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ACCSQ96QU6 501 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TRIB3Q96RU7 358 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 P2RX4Q99571 388 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 DOHHQ9BU89 302 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 DERL1Q9BUN8 251 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 C20orf24Q9BUV8 137 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 EFCAB11Q9BUY7 163 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 OR11A1Q9GZK7 315 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 POLR2J2Q9GZM3 115 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 SLC35B3Q9H1N7 401 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TCEAL2Q9H3H9 227 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 SRD5A3Q9H8P0 318 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 AKIRIN1Q9H9L7 192 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 BEX1Q9HBH7 125 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TMEM9BQ9NQ34 198 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PIGVQ9NUD9 493 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF226Q9NYT6 803 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PTRH2Q9Y3E5 179 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 WIPI2Q9Y4P8 454 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms