RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CLPXO76031 633 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 SERPINA2P20848 420 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 GDNFP39905 211 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 DYNC1I2Q13409 638 aaKnown RBP12.17□□□□□ -0.46
VPS39-210ENST00000568357 MED22Q15528 200 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 LRRC75BQ2VPJ9 315 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 SLC22A6Q4U2R8 563 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 ACSM3Q53FZ2 586 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 PAN3Q58A45 887 aaKnown RBP12.17□□□□□ -0.46
VPS39-210ENST00000568357 PRR31Q5SQ13 230 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 PRAMEF5Q5TYX0 476 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 GDPGP1Q6ZNW5 385 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 OSR2Q8N2R0 312 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 OR4F5Q8NH21 305 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 MUL1Q969V5 352 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 CNBD2Q96M20 576 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 TMEM133Q9H2Q1 129 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 BEX1Q9HBH7 125 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 TAS2R3Q9NYW6 316 aa12.17□□□□□ -0.46
VPS39-210ENST00000568357 IGHV2-26A0A0B4J1V2 119 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 GEMIN2O14893 280 aaKnown RBP12.16□□□□□ -0.46
VPS39-210ENST00000568357 RGS10O43665 173 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 CSTBP04080 98 aaKnown RBP12.16□□□□□ -0.46
VPS39-210ENST00000568357 CGB3P0DN86 165 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 CGB7P0DN87 165 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 CDK2P24941 298 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 HSPA13P48723 471 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 RAB13P51153 203 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 RBM11P57052 281 aaKnown RBP12.16□□□□□ -0.46
VPS39-210ENST00000568357 SRSF4Q08170 494 aaKnown RBP12.16□□□□□ -0.46
VPS39-210ENST00000568357 SSX2Q16385 188 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 LY6EQ16553 131 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 AANATQ16613 207 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 C17orf58Q2M2W7 97 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 NHLRC3Q5JS37 347 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 UTF1Q5T230 341 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 FAM27D1Q5T7N8 215 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 SHISA2Q6UWI4 295 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 GLIPR1L1Q6UWM5 242 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 HEPN1Q6WQI6 88 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 Q6ZSV7 163 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 CDH26Q8IXH8 852 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 JAGN1Q8N5M9 183 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 MS4A15Q8N5U1 240 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 SUMF2Q8NBJ7 301 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 OR4D6Q8NGJ1 314 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 LINC01006Q8NI28 216 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 PLPPR1Q8TBJ4 325 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 MALSU1Q96EH3 234 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 S100A13Q99584 98 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 TMED9Q9BVK6 235 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 GAL3ST2Q9H3Q3 398 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 IFT22Q9H7X7 185 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 KIF25Q9UIL4 384 aa12.16□□□□□ -0.46
VPS39-210ENST00000568357 MRPS28Q9Y2Q9 187 aaKnown RBP12.16□□□□□ -0.46
VPS39-210ENST00000568357 TBL2Q9Y4P3 447 aaKnown RBP12.16□□□□□ -0.46
VPS39-210ENST00000568357 MEIKINA0A087WXM9 373 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 A0A1B0GUS0 222 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 CLPSL1A2RUU4 121 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 MEGF11A6BM72 1044 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 ZNF780AO75290 641 aaPredicted RBP12.15□□□□□ -0.46
VPS39-210ENST00000568357 GTF2F2P13984 249 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 JUNBP17275 347 aaPredicted RBP12.15□□□□□ -0.46
VPS39-210ENST00000568357 MAP2K4P45985 399 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 GPR50Q13585 617 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 PLA1AQ53H76 456 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 RSBN1Q5VWQ0 802 aaPredicted RBP12.15□□□□□ -0.46
VPS39-210ENST00000568357 LIPKQ5VXJ0 399 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 OLFML2AQ68BL7 652 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 DHRS7BQ6IAN0 325 aaPredicted RBP12.15□□□□□ -0.46
VPS39-210ENST00000568357 BRICD5Q6PL45 260 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 ABHD12Q8N2K0 398 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 OR13A1Q8NGR1 328 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 DPCDQ9BVM2 203 aaPredicted RBP12.15□□□□□ -0.46
VPS39-210ENST00000568357 CLEC7AQ9BXN2 247 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 BARHL1Q9BZE3 327 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 NCOR1P1Q9H4R4 102 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 OR6C3Q9NZP0 311 aa12.15□□□□□ -0.46
VPS39-210ENST00000568357 TRAV39A0A0B4J263 110 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 KBTBD11-OT1A0A1B0GTJ5 212 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 FAM172BPA6NC97 362 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 VGLL3A8MV65 326 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 SC5DO75845 299 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 OR7C1O76099 320 aaPredicted RBP12.14□□□□□ -0.47
VPS39-210ENST00000568357 HSMCR30P0CW71 290 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 MAPK3P27361 379 aaPredicted RBP12.14□□□□□ -0.47
VPS39-210ENST00000568357 PAX5Q02548 391 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 TPBGQ13641 420 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 HIST2H2BDQ6DRA6 164 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 SLC35E4Q6ICL7 350 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 PRSS48Q7RTY5 328 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 CEACAM19Q7Z692 300 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 LRRTM1Q86UE6 522 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 ZNF565Q8N9K5 539 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 OR4P4Q8NGL7 312 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 TMEM203Q969S6 136 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 CCDC90BQ9GZT6 254 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 SLITRK2Q9H156 845 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 PCDHB16Q9NRJ7 776 aa12.14□□□□□ -0.47
VPS39-210ENST00000568357 RAB26Q9ULW5 256 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms