RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PRKACAP17612 351 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 VDAC1P21796 283 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 GNRHRP30968 328 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 NKX2-1P43699 371 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 TNFSF10P50591 281 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 UCP2P55851 309 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 UBE2NP61088 152 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 BAXQ07812 192 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 GUSBP1Q15486 140 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 HMGN3Q15651 99 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 TRIP6Q15654 476 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 C3AR1Q16581 482 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SWI5Q1ZZU3 235 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SP6Q3SY56 376 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 HIKESHIQ53FT3 197 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 IGSF11Q5DX21 431 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 INO80CQ6PI98 192 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 HAGHLQ6PII5 290 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 BRICD5Q6PL45 260 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 TBC1D26Q86UD7 250 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 MDP1Q86V88 176 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 ZNF695Q8IW36 515 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 C1orf174Q8IYL3 243 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 H1FOOQ8IZA3 346 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 SELENOHQ8IZQ5 122 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 GAPTQ8N292 157 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SLC35G3Q8N808 338 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 KDF1Q8NAX2 398 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 SUMF2Q8NBJ7 301 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 CLRN3Q8NCR9 226 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 NAXEQ8NCW5 288 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 DMBX1Q8NFW5 382 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 OR8G5Q8NG78 346 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 OR11L1Q8NGX0 322 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 NEK7Q8TDX7 302 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 KIRREL1Q96J84 757 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 AKR1E2Q96JD6 320 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 TP53RKQ96S44 253 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 NRIP2Q9BQI9 281 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 MS4A7Q9GZW8 240 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 SLC25A31Q9H0C2 315 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 DEFB127Q9H1M4 99 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 ZNF552Q9H707 407 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 OBP2BQ9NPH6 170 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 LUZP4Q9P127 313 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 PURGQ9UJV8 347 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 RCL1Q9Y2P8 373 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 UBE2J1Q9Y385 318 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 R4GN57 208 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 TNRC6AQ8NDV7 1962 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 TECTAO75443 2155 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 TRAV24A0A0B4J272 114 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 TRAV17A0A0B4J275 112 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 F8W036 122 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 TRIM77I1YAP6 450 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 TSPAN4O14817 238 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 CD5P06127 495 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 SCTP09683 121 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 H2AFB1P0C5Y9 115 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 DANCRP0C864 163 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 SPP1P10451 314 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 CBR1P16152 277 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 ADCYAP1P18509 176 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 RCC1P18754 421 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 ATF4P18848 351 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 COX5AP20674 150 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 EIF2S3P41091 472 aaKnown RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 CD200P41217 278 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 LPAR6P43657 344 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 DVL1P1P54792 670 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 ERVK11-1P61568 191 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 PPP1CBP62140 327 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 EWSR1Q01844 656 aaKnown RBP eCLIP5.33□□□□□ -1.56
CLN3-223ENST00000566472 ZNF266Q14584 549 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 HERPUD1Q15011 391 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 PDCD1Q15116 288 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 OR8G1Q15617 311 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 MSMO1Q15800 293 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 NMSQ5H8A3 153 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 FAM76BQ5HYJ3 339 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 SPIN3Q5JUX0 258 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 ZNF324BQ6AW86 544 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 DHRS7BQ6IAN0 325 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 OR2T2Q6IF00 324 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 Q6P435 159 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 FAM122CQ6P4D5 195 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 FIP1L1Q6UN15 594 aaKnown RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 PCSK4Q6UW60 755 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 Q6ZRG5 221 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 FAM214BQ7L5A3 538 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 FAM219AQ8IW50 185 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 FOXRED2Q8IWF2 684 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 C17orf78Q8N4C9 275 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 OR2C3Q8N628 320 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 LFNGQ8NES3 379 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 OR52M1Q8NGK5 317 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 LILRB1Q8NHL6 650 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 SECTM1Q8WVN6 248 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms