RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FUOMA2VDF0 154 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 NPIPB11E5RHQ5 1161 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 H0YJX3 145 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 CASQ2O14958 399 aaPredicted RBP11.92□□□□□ -0.5
CLN3-213ENST00000565047 GNAO1P09471 354 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 PTGFRP43088 359 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 OR3A4PP47883 348 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 RCN1Q15293 331 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 PIGYQ3MUY2 71 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 RSBN1Q5VWQ0 802 aaPredicted RBP11.92□□□□□ -0.5
CLN3-213ENST00000565047 OR52W1Q6IF63 320 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 TRAPPC6BQ86SZ2 158 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 LYPD6Q86Y78 171 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 DHRSXQ8N5I4 330 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 OR10K1Q8NGX5 313 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 PLPPR1Q8TBJ4 325 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 CYGBQ8WWM9 190 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 GHSRQ92847 366 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 KIRREL1Q96J84 757 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 TMEM138Q9NPI0 162 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 PITPNC1Q9UKF7 332 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 HSPE1-MOB4S4R3N1 261 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 KIAA2026Q5HYC2 2103 aa11.92□□□□□ -0.5
CLN3-213ENST00000565047 TRBV5-7A0A0A0MS05 114 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 KBTBD11-OT1A0A1B0GTJ5 212 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 MAGEA13PA6NCF6 341 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 ZNF729A6NN14 1252 aaPredicted RBP11.91□□□□□ -0.5
CLN3-213ENST00000565047 ADARB2-AS1A8MUL3 147 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 BUB1B-PAK6H3BSN5 160 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 CDRT1O95170 752 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 SLC34A1Q06495 639 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 C2orf68Q2NKX9 166 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 HLA-DRB5Q30154 266 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 PDLIM3Q53GG5 364 aaPredicted RBP11.91□□□□□ -0.5
CLN3-213ENST00000565047 Q6ZTK2 550 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 DTX3Q8N9I9 347 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 OR13A1Q8NGR1 328 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 FAM110DQ8TAY7 271 aaPredicted RBP11.91□□□□□ -0.5
CLN3-213ENST00000565047 NDNFQ8TB73 568 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 ZNF596Q8TC21 504 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 OCSTAMPQ9BR26 566 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 ABCB10Q9NRK6 738 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 PLCXD1Q9NUJ7 323 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 FKBP14Q9NWM8 211 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 OR6C3Q9NZP0 311 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 KIF25Q9UIL4 384 aa11.91□□□□□ -0.5
CLN3-213ENST00000565047 TRAV8-7A0A075B6U6 113 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 FAM172BPA6NC97 362 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 AMY1AP04745 511 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 AMY2AP04746 511 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 CD2P06729 351 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 BDKRB2P30411 391 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 CAPGP40121 348 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 ST3GAL4Q11206 333 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 TET2Q6N021 2002 aaPredicted RBP11.9□□□□□ -0.5
CLN3-213ENST00000565047 SATL1Q86VE3 508 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 C11orf44Q8N8P7 122 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 SETD9Q8NE22 299 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 CPNE2Q96FN4 548 aaPredicted RBP11.9□□□□□ -0.5
CLN3-213ENST00000565047 NR1H4Q96RI1 486 aaPredicted RBP11.9□□□□□ -0.5
CLN3-213ENST00000565047 ING3Q9NXR8 418 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 PSORS1C1Q9UIG5 152 aa11.9□□□□□ -0.5
CLN3-213ENST00000565047 FAM90A18PA6NE21 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A16PA6NEW6 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A20PA6NIJ5 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A9PA6NNJ1 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A12PA8MX19 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A5PA8MXJ8 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 LEUTXA8MZ59 168 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 F2RL2O00254 374 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 HSPB6O14558 160 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 MAGEB3O15480 346 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 XPNPEP2O43895 674 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 CD1AP06126 327 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 CSF1P09603 554 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A15PP0C7V4 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A13PP0C7W8 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A14PP0C7W9 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FAM90A24PP0C7X0 464 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 VSIG10L2P0DP72 767 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 CD28P10747 220 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 MYL12AP19105 171 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 FSTP19883 344 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 CD24P25063 80 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 C21orf33P30042 268 aaPredicted RBP11.89□□□□□ -0.51
CLN3-213ENST00000565047 ZNF93P35789 620 aaPredicted RBP11.89□□□□□ -0.51
CLN3-213ENST00000565047 RBM11P57052 281 aaKnown RBP11.89□□□□□ -0.51
CLN3-213ENST00000565047 RSU1Q15404 277 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 Q499Y3 187 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 PAN3Q58A45 887 aaKnown RBP11.89□□□□□ -0.51
CLN3-213ENST00000565047 YIF1BQ5BJH7 314 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 TPTE2P1Q5T6R2 138 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 DDI2Q5TDH0 399 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 OSR2Q8N2R0 312 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 ZFP41Q8N8Y5 198 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 SUMF2Q8NBJ7 301 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 GPER1Q99527 375 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 BARHL1Q9BZE3 327 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 PRSS22Q9GZN4 317 aa11.89□□□□□ -0.51
CLN3-213ENST00000565047 CALYQ9NYX4 217 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms