RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 P2RY6Q15077 328 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ZNF74Q16587 644 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 HLA-DRB5Q30154 266 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 C6orf141Q5SZD1 244 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TMEM215Q68D42 235 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 FAM166AQ6J272 317 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 CGB2Q6NT52 195 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ZNF343Q6P1L6 599 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 C8orf82Q6P1X6 216 aaPredicted RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 Q6ZSR3 168 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 CALHM3Q86XJ0 350 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 BEST3Q8N1M1 668 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TEX45Q8NA69 505 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 OR4N2Q8NGD1 307 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TMEM37Q8WXS4 190 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ADTRPQ96IZ2 230 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ZNF488Q96MN9 340 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 LYSMD1Q96S90 227 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ANAPC13Q9BS18 74 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 OR52D1Q9H346 318 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 MOB1AQ9H8S9 216 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 DMAC2Q9NW81 257 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 BET1LQ9NYM9 111 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 OR5AC2Q9NZP5 309 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 MUTYHQ9UIF7 546 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 POMT2Q9UKY4 750 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TBX21Q9UL17 535 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 BOKQ9UMX3 212 aaPredicted RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 HS3ST2Q9Y278 367 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ZNF780BQ9Y6R6 833 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 NUP153P49790 1475 aaKnown RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 PTPRFP10586 1907 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 PLXND1Q9Y4D7 1925 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 HECW1Q76N89 1606 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 CDK5RAP2Q96SN8 1893 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 ABCA8O94911 1581 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 A0A1W2PPI3 338 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 IFITM10A6NMD0 228 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 B4DXG7 233 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 TMEM150CB9EJG8 249 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 TOXO94900 526 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 YIF1AO95070 293 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 EPCAMP16422 314 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 NMBRP28336 390 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 ELK3P41970 407 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 MAGEA5P43359 124 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 OR1E2P47887 323 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 XGP55808 180 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 NDUFA6P56556 154 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 HSPE1P61604 102 aaKnown RBP4.28□□□□□ -1.72
VPS35-205ENST00000563984 RPS25P62851 125 aaKnown RBP4.28□□□□□ -1.72
VPS35-205ENST00000563984 MYL5Q02045 173 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 TGFBR3Q03167 851 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 CD164Q04900 197 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 KLRB1Q12918 225 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 ZNF266Q14584 549 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 EXOSC7Q15024 291 aaKnown RBP4.28□□□□□ -1.72
VPS35-205ENST00000563984 ZNF672Q499Z4 452 aaPredicted RBP4.28□□□□□ -1.72
VPS35-205ENST00000563984 KHDC3LQ587J8 217 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 FFAR4Q5NUL3 377 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 C1orf195Q5TG92 126 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GGNBP1Q5YKI7 109 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GLT8D1Q68CQ7 371 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 RTL6Q6ICC9 239 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 C12orf54Q6X4T0 127 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GBGT1Q8N5D6 347 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 PARP16Q8N5Y8 322 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GCSAMQ8N6F7 178 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 SLC35G3Q8N808 338 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 OR11H4Q8NGC9 324 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 OR4C13Q8NGP0 309 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 OR1L8Q8NGR8 309 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 OR4F5Q8NH21 305 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 OR1S1Q8NH92 325 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 HMGCLL1Q8TB92 370 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 ZNF675Q8TD23 568 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GPR148Q8TDV2 347 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 DOK4Q8TEW6 326 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 C15orf40Q8WUR7 153 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 SLC38A5Q8WUX1 472 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 MBD3L1Q8WWY6 194 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 RDH5Q92781 318 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 RNF183Q96D59 192 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 MS4A4EQ96PG1 132 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 TRIB3Q96RU7 358 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 THTPAQ9BU02 230 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GTSF1LQ9H1H1 148 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 ZNF586Q9NXT0 402 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 IL36GQ9NZH8 169 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 C1RLQ9NZP8 487 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 GALPQ9UBC7 116 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 RPS6KB2Q9UBS0 482 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 CES1P1Q9UKY3 287 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 RCL1Q9Y2P8 373 aaKnown RBP4.28□□□□□ -1.72
VPS35-205ENST00000563984 TMED7Q9Y3B3 224 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 KNDC1Q76NI1 1749 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 SIGLEC1Q9BZZ2 1709 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 PZPP20742 1482 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 CAMTA1Q9Y6Y1 1673 aa4.28□□□□□ -1.72
VPS35-205ENST00000563984 ZSWIM8A7E2V4 1837 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms