RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SNAPC5O75971 98 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 HPXP02790 462 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 FCGR3AP08637 254 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 CTXN2P0C2S0 81 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 OR4E1P0C645 316 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 KIR2DS4P43632 304 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 ZNF81P51508 661 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 UBE2MP61081 183 aaKnown RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 ERVK11-1P61568 191 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 KIR2DS1Q14954 304 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 ZNF146Q15072 292 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 FCN2Q15485 313 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 SURF2Q15527 256 aaPredicted RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 ZNF626Q68DY1 528 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 Q6ZR03 302 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 Q6ZS49 121 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 WDR86Q86TI4 376 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 RTN4RL2Q86UN3 420 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 SLC25A42Q86VD7 318 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 SPICQ8N5J4 248 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 SUMF2Q8NBJ7 301 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 OR13C8Q8NGS7 320 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 OR10Z1Q8NGY1 313 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 ZNF431Q8TF32 576 aaPredicted RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 TMEM171Q8WVE6 324 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 MRPL24Q96A35 216 aaKnown RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 PLPPR2Q96GM1 343 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 ZNF488Q96MN9 340 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 DIRC2Q96SL1 478 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 DHRS9Q9BPW9 319 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 SYT3Q9BQG1 590 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 DPCDQ9BVM2 203 aaPredicted RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 TMUB1Q9BVT8 246 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 FN3KRPQ9HA64 309 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 RANGRFQ9HD47 186 aaPredicted RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 TREM2Q9NZC2 230 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 RCC2Q9P258 522 aaKnown RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 MGAT4AQ9UM21 535 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 HIVEP1P15822 2718 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 RTTNQ86VV8 2226 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 MTORP42345 2549 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 MEIKINA0A087WXM9 373 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 A0A1W2PPR1 153 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 hCG_1807616A0A1W2PRN6 198 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 DPRXA6NFQ7 191 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 SIAH2O43255 324 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 THBDP07204 575 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 CD3EP07766 207 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 GSTT2P0CG29 244 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 SULT1A3P0DMM9 295 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 SULT1A4P0DMN0 295 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 OR5H8P0DN80 308 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 ANXA3P12429 323 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 FOSL1P15407 271 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 GLRA1P23415 457 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 FPR2P25090 351 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 DUSP1P28562 367 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 GLP1RP43220 463 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 BSPH1Q075Z2 132 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 CD300CQ08708 224 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 ATPAF1Q5TC12 328 aaPredicted RBP7.54□□□□□ -1.2
VPS39-207ENST00000563692 LPCAT3Q6P1A2 487 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 DHRS11Q6UWP2 260 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 C22orf34Q6ZV56 151 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 LRP11Q86VZ4 500 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 C11orf53Q8IXP5 236 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 LRRC75A-AS1Q8N1F1 130 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 DRAXINQ8NBI3 349 aaPredicted RBP7.54□□□□□ -1.2
VPS39-207ENST00000563692 ZFAND1Q8TCF1 268 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 ASB13Q8WXK3 278 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 MAFIPQ8WZ33 124 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 ERGIC1Q969X5 290 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 ELMOD3Q96FG2 381 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 HS3ST6Q96QI5 342 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 SEC22CQ9BRL7 303 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 ZNF2Q9BSG1 426 aaPredicted RBP7.54□□□□□ -1.2
VPS39-207ENST00000563692 HDHD3Q9BSH5 251 aaPredicted RBP7.54□□□□□ -1.2
VPS39-207ENST00000563692 RANBP3Q9H6Z4 567 aaPredicted RBP7.54□□□□□ -1.2
VPS39-207ENST00000563692 HES4Q9HCC6 221 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 CA10Q9NS85 328 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 C1orf123Q9NWV4 160 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 GPR132Q9UNW8 380 aa7.54□□□□□ -1.2
VPS39-207ENST00000563692 C14orf166Q9Y224 244 aaKnown RBP7.54□□□□□ -1.2
VPS39-207ENST00000563692 TRBV6-6A0A0A6YYG2 114 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 TRAV24A0A0B4J272 114 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 CEACAM18A8MTB9 384 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 A8MV72 311 aaPredicted RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 TRDCB7Z8K6 153 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 IFNL4K9M1U5 179 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 SDCBPO00560 298 aaPredicted RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 SPRY3O43610 288 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 DIRAS3O95661 229 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PTBP3O95758 552 aaKnown RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 HAND1O96004 215 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 NAPSAO96009 420 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 KNG1P01042 644 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 VSIG10L2P0DP72 767 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PGAM2P15259 253 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 AKR1C4P17516 323 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 ERP29P30040 261 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms