RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 IGF2P01344 180 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 NDUFA5Q16718 116 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 TEX30Q5JUR7 227 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 EIF5AL1Q6IS14 154 aaKnown RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 CDH24Q86UP0 819 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 SLC35G3Q8N808 338 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 OR4C16Q8NGL9 310 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 LEAP2Q969E1 77 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 OR2D2Q9H210 308 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 IGHV1-18A0A0C4DH31 117 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 PTTG1O95997 202 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 DAOP14920 347 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 RPL23AP62750 156 aaKnown RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 H3F3AP84243 136 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 CLINT1Q14677 625 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 BAK1Q16611 211 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 PAQR4Q8N4S7 273 aaPredicted RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 HPSE2Q8WWQ2 592 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 FAM168AQ92567 244 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 POM121L2Q96KW2 1035 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 ABHD1Q96SE0 405 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 HEXA-AS1Q9H8Q6 139 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 SCPEP1Q9HB40 452 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 NPTNQ9Y639 398 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 CYB5BO43169 146 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 SCGB2A1O75556 95 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 TFF1P04155 84 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 MRPS11P82912 194 aaKnown RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 PLAURQ03405 335 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 AKR1C1Q04828 323 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 LGI3Q8N145 548 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 CELF2-AS1Q8N7Q2 184 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 SUMF2Q8NBJ7 301 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 DIRC2Q96SL1 478 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 SDHAF2Q9NX18 166 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 CLCF1Q9UBD9 225 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 MBD3L4A6NDZ8 208 aaPredicted RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 MBD3L3A6NE82 208 aaPredicted RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 MBD3L5A6NJ08 208 aaPredicted RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 F2RL2O00254 374 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 PPP1CCP36873 323 aaKnown RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 CYCSP99999 105 aaKnown RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 SPAG16Q8N0X2 631 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 MINDY2Q8NBR6 621 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 MBD3L2Q8NHZ7 208 aaPredicted RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 SLC25A21Q9BQT8 299 aaPredicted RBP7.92□□□□□ -1.14
VPS39-205ENST00000562258 PIMREGQ9BSJ6 248 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 SPRY4Q9C004 299 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 POFUT1Q9H488 388 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 GCM1Q9NP62 436 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 IL19Q9UHD0 177 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 INSIG2Q9Y5U4 225 aa7.92□□□□□ -1.14
VPS39-205ENST00000562258 PLAUP00749 431 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 RCC1P18754 421 aaPredicted RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 PDLIM4P50479 330 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 PRRX1P54821 245 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 SORDQ00796 357 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 RAB31Q13636 194 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 PDLIM3Q53GG5 364 aaPredicted RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 MAPK1IP1LQ8NDC0 245 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 C1orf162Q8NEQ5 155 aaPredicted RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 CDK2AP1O14519 115 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 FBXO24O75426 580 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 GZMHP20718 246 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 GRNP28799 593 aaKnown RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 TMEM68Q96MH6 324 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 G6PC2Q9NQR9 355 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 TMEM106BQ9NUM4 274 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 ZNF319Q9P2F9 582 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 AK3Q9UIJ7 227 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 PIGBOS1A0A0B4J2F0 54 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 C17orf100A8MU93 164 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 HAX1O00165 279 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 COX5BP10606 129 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 SPANXN5Q5MJ07 72 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 ZNF787Q6DD87 383 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 NHLRC1Q6VVB1 395 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 FAM216BQ8N7L0 139 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 GRPEL2Q8TAA5 225 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 MEGF10Q96KG7 1140 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 C7orf50Q9BRJ6 194 aaKnown RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 RSPO3Q9BXY4 272 aaPredicted RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 PECRQ9BY49 303 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 MRPS18AQ9NVS2 196 aaKnown RBP7.91□□□□□ -1.14
VPS39-205ENST00000562258 IL36GQ9NZH8 169 aa7.91□□□□□ -1.14
VPS39-205ENST00000562258 IGKV3D-15A0A087WSY6 115 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 TMEM210A6NLX4 147 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 CRYZL1O95825 349 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 OR2H2O95918 312 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 TMEM11P17152 192 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 SSX2Q16385 188 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 RPUSD3Q6P087 351 aaKnown RBP7.9□□□□□ -1.14
VPS39-205ENST00000562258 SLC16A12Q6ZSM3 486 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 CALHM1Q8IU99 346 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 TERB2Q8NHR7 220 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 SLIRPQ9GZT3 109 aaKnown RBP7.9□□□□□ -1.14
VPS39-205ENST00000562258 MFFQ9GZY8 342 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 CEP192Q8TEP8 1941 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 PIN1P1O15428 100 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 ST8SIA5O15466 376 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms