RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 KIR2DL2P43627 348 aaPredicted RBP9.05□□□□□ -0.96
CUX1-217ENST00000558836 CEBPDP49716 269 aaPredicted RBP9.05□□□□□ -0.96
CUX1-217ENST00000558836 ASCL1P50553 236 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 PPP1CBP62140 327 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 GNG3P63215 75 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 FAM58AQ8N1B3 248 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 BSCL2Q96G97 398 aaPredicted RBP9.05□□□□□ -0.96
CUX1-217ENST00000558836 PARP12Q9H0J9 701 aaKnown RBP9.05□□□□□ -0.96
CUX1-217ENST00000558836 SLC25A32Q9H2D1 315 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 CDH20Q9HBT6 801 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 BARX1Q9HBU1 254 aaPredicted RBP9.05□□□□□ -0.96
CUX1-217ENST00000558836 GP6Q9HCN6 339 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 Q9N2K0 584 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 ZZEF1O43149 2961 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 MPV17P39210 176 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 PLEKHN1Q494U1 663 aaPredicted RBP9.05□□□□□ -0.96
CUX1-217ENST00000558836 ZNF818PQ6ZRF7 136 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 BAP18Q8IXM2 172 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 GAPTQ8N292 157 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 WNT2BQ93097 391 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 CNTNAP3BQ96NU0 1288 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 CNTNAP3Q9BZ76 1288 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 TINAGQ9UJW2 476 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 PCDHB10Q9UN67 800 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 LHX6Q9UPM6 363 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 NBASA2RRP1 2371 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 ZGRF1Q86YA3 2104 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 TRAV17A0A0B4J275 112 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 A8MXK9 166 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 K7EM74 188 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 FBXO24O75426 580 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 NAPSAO96009 420 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 APOC3P02656 99 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 MBPP02686 304 aaPredicted RBP9.04□□□□□ -0.96
CUX1-217ENST00000558836 TK1P04183 234 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 FGF2P09038 288 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 HKR1P10072 659 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 TGFBR3Q03167 851 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 PSG7Q13046 419 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 GABRA6Q16445 453 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 TMEM268Q5VZI3 342 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 ZNF600Q6ZNG1 722 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 ZNF826PQ6ZT77 177 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 ZNF573Q86YE8 665 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 Q8NFD4 153 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 OPN3Q9H1Y3 402 aaPredicted RBP9.04□□□□□ -0.96
CUX1-217ENST00000558836 OR51I2Q9H344 312 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 CCL28Q9NRJ3 127 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 ZNF175Q9Y473 711 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 SESN1Q9Y6P5 492 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 SPTA1P02549 2419 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 IGHG3P01860 377 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 TPT1P13693 172 aaKnown RBP9.04□□□□□ -0.96
CUX1-217ENST00000558836 ECI1P42126 302 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 FABP6P51161 128 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 BTN1A1Q13410 526 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 RPRMLQ8N4K4 120 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 SLC35G3Q8N808 338 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 SCCPDHQ8NBX0 429 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 MSI2Q96DH6 328 aaKnown RBP9.04□□□□□ -0.96
CUX1-217ENST00000558836 KIRREL1Q96J84 757 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 SLC5A7Q9GZV3 580 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 OR14J1Q9UGF5 321 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 MEMO1Q9Y316 297 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 MPC1Q9Y5U8 109 aa9.04□□□□□ -0.96
CUX1-217ENST00000558836 B8ZZF3 427 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 K7EPK0 472 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 DEGS1O15121 323 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 RPL12P30050 165 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 UCP2P55851 309 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 LIAT1Q6ZQX7 453 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 TBC1D26Q86UD7 250 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 LDLRAD3Q86YD5 345 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 FAM71E2Q8N5Q1 922 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ZNF610Q8N9Z0 462 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 C3orf85A0A1B0GTC6 90 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 MPPED1O15442 326 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 SLC34A2O95436 690 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 SRSF3P84103 164 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 ZNF154Q13106 437 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ATRAIDQ6UW56 229 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 Q6ZT83 130 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 MRPL30Q8TCC3 161 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 KLF14Q8TD94 323 aaPredicted RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 ERGIC1Q969X5 290 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 MARVELD3Q96A59 401 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 SHARPINQ9H0F6 387 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ESRP2Q9H6T0 727 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 MSL2Q9HCI7 577 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 OBP2BQ9NPH6 170 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 UFSP2Q9NUQ7 469 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 DLL3Q9NYJ7 618 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 RCC2Q9P258 522 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 USF3Q68DE3 2245 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 TLN1Q9Y490 2541 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 DEDDO75618 318 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ZP3P21754 424 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ID4P47928 161 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 TMEM33P57088 247 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ZNF565Q8N9K5 539 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms