RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PDCD1Q15116 288 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 TAF9Q16594 264 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 C11orf91Q3C1V1 193 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 PIGYQ3MUY2 71 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 NHLRC3Q5JS37 347 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 RAB12Q6IQ22 244 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 LYPD2Q6UXB3 125 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 BTNL3Q6UXE8 466 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 Q6ZNX1 250 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 OSR2Q8N2R0 312 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 ZNF561Q8N587 486 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 TMEM185AQ8NFB2 350 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 CHPT1Q8WUD6 406 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 ST8SIA4Q92187 359 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 TMEM186Q96B77 213 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 MRPS24Q96EL2 167 aaKnown RBP9.07□□□□□ -0.96
SHMT2-218ENST00000555213 SDSLQ96GA7 329 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 POM121Q96HA1 1249 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 ARHGAP5-AS1Q96IT6 56 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 PECRQ9BY49 303 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 C11orf54Q9H0W9 315 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-218ENST00000555213 CST11Q9H112 138 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.07□□□□□ -0.96
SHMT2-218ENST00000555213 YAE1D1Q9NRH1 226 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 IL36RNQ9UBH0 155 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 CTSZQ9UBR2 303 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 SLC25A10Q9UBX3 287 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-218ENST00000555213 MTFP1Q9UDX5 166 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 ZNF222Q9UK12 451 aa9.07□□□□□ -0.96
SHMT2-218ENST00000555213 MAP1AP78559 2803 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 LOC105371242A0A075B767 164 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 PPIAL4CA0A0B4J2A2 164 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 A8MV72 311 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 MFNGO00587 321 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 DVL1O14640 695 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 SH2D1BO14796 132 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 GEMIN2O14893 280 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 PHF1O43189 567 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 ENSAO43768 121 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 HAND1O96004 215 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 HNF1AP20823 631 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 BLVRBP30043 206 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 PRSS3P35030 304 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 SNU13P55769 128 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 FGF12P61328 243 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 SEC61A1P61619 476 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 SCN1BQ07699 218 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 ASAH1Q13510 395 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 ZNF146Q15072 292 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 RNASE12Q5GAN4 147 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 WDR25Q64LD2 544 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 Q6P435 159 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 ZNF788Q6ZQV5 615 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 TEX29Q8N6K0 151 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 ASCC1Q8N9N2 400 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 CHST4Q8NCG5 386 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 PPP1R35Q8TAP8 253 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 FCAMRQ8WWV6 532 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 GAFA1Q96PS6 74 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 NEDD4LQ96PU5 975 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 SMR3AQ99954 134 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 URM1Q9BTM9 101 aaKnown RBP9.06□□□□□ -0.96
SHMT2-218ENST00000555213 FAM234AQ9H0X4 552 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 HIF1ANQ9NWT6 349 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 ST3GAL6Q9Y274 331 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 HIVEP1P15822 2718 aa9.06□□□□□ -0.96
SHMT2-218ENST00000555213 CR1P17927 2039 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 LINC00854A0A1B0GVQ3 168 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 ANKRD20A5PA0PJZ0 165 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 TMEM235A6NFC5 223 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 KIAA1324LA8MWY0 1029 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 J3QLI3 93 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 SULT1C2O00338 296 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 TNFRSF13BO14836 293 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 ZNF44P15621 663 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 HIST1H1DP16402 221 aaKnown RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 NDUFB7P17568 137 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 GABRR1P24046 479 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 CHATP28329 748 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 BTCP35070 178 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 GDNFP39905 211 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 CEBPDP49716 269 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 RBM11P57052 281 aaKnown RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 MRPS10P82664 201 aaKnown RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 KRTAP1-1Q07627 177 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 IL13RA2Q14627 380 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 DCAF12L2Q5VW00 463 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 BRICD5Q6PL45 260 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 Q6ZPA2 131 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 Q6ZTK2 550 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 LINC00596Q86U02 117 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 CENPSQ8N2Z9 138 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 POC5Q8NA72 575 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 OR56B1Q8NGI3 324 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 C15orf40Q8WUR7 153 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 H1FXQ92522 213 aaKnown RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 RAB3CQ96E17 227 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 SEBOXQ9HB31 216 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-218ENST00000555213 HSF4Q9ULV5 492 aa9.05□□□□□ -0.96
SHMT2-218ENST00000555213 ANAPC10Q9UM13 185 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms