RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TERTO14746 1132 aaKnown RBP4.79□□□□□ -1.64
LIMA1-215ENST00000552823 SSSCA1O60232 199 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 TK1P04183 234 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 DAOP14920 347 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 CD80P33681 288 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 CBX5P45973 191 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 PPT1P50897 306 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 AKR1D1P51857 326 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM33P57088 247 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 GUCA2BQ16661 112 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 FAM74A3Q4VXF1 159 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 ETV3LQ6ZN32 361 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 Q6ZPA2 131 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 FAM89BQ8N5H3 189 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 SUMF2Q8NBJ7 301 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM178AQ8NBL3 297 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 LHFPL5Q8TAF8 219 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 WDYHV1Q96HA8 205 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 IER2Q9BTL4 223 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 C1orf123Q9NWV4 160 aa4.79□□□□□ -1.64
LIMA1-215ENST00000552823 C21orf140B9A014 251 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ATXN7O15265 892 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 HMGB3O15347 200 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ADAM20O43506 726 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TIMM8AO60220 97 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 PPYP01298 95 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TPT1P13693 172 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 CTSSP25774 331 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MPV17P39210 176 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 UBA52P62987 128 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 OR2F1Q13607 317 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 VAX1Q5SQQ9 334 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 PEAR1Q5VY43 1037 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 FBXW9Q5XUX1 488 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 BTNL3Q6UXE8 466 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 SSX9Q7RTT3 188 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TBC1D26Q86UD7 250 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ZCCHC24Q8N2G6 241 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 SLC35G3Q8N808 338 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF610Q8N9Z0 462 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 OR1K1Q8NGR3 316 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 GTF3AQ92664 365 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TRAF4Q9BUZ4 470 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 SPRY4Q9C004 299 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TAF9BQ9HBM6 251 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 AMDHD2Q9Y303 409 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MEMO1Q9Y316 297 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ACACBO00763 2458 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MALRD1Q5VYJ5 2156 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 A0A1W2PPE3 182 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 CDRT15L2A8MXV6 281 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MBPP02686 304 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 BMP5P22003 454 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 NFYBP25208 207 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF133P52736 654 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 PPP1CBP62140 327 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 VAMP2P63027 116 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 HIST1H3AP68431 136 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 AESQ08117 197 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 HIST2H3PS2Q5TEC6 136 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 H3F3CQ6NXT2 135 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM182Q6ZP80 229 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF818PQ6ZRF7 136 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 HIST2H3AQ71DI3 136 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 CBLN2Q8IUK8 224 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ZFP82Q8N141 532 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 FAM58AQ8N1B3 248 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 C9orf106Q8NAJ2 232 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 BVESQ8NE79 360 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 POM121L2Q96KW2 1035 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ABHD14AQ9BUJ0 271 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 REG4Q9BYZ8 158 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 EIF5A2Q9GZV4 153 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 SH3BGRL3Q9H299 93 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 SLC25A32Q9H2D1 315 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 NSG2Q9Y328 171 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 FBXO7Q9Y3I1 522 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ADAMTS20P59510 1910 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 M0R1B8 84 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 SPRY3O43610 288 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM127O75204 238 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 B3GALNT1O75752 331 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 IL2RAP01589 272 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 IGHV1-2P23083 117 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TNFSF10P50591 281 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 CYCSP99999 105 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 RUNX1Q01196 453 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF816Q0VGE8 651 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 OR8G1Q15617 311 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 FAM189A2Q15884 450 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ACTBL2Q562R1 376 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 PLA2G2CQ5R387 149 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 TFAP2EQ6VUC0 442 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 Q6ZRG5 221 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 DPPA2Q7Z7J5 298 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MRGPRDQ8TDS7 321 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 ADAMTS17Q8TE56 1095 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 GLYATL2Q8WU03 294 aa4.78□□□□□ -1.64
LIMA1-215ENST00000552823 MRPS24Q96EL2 167 aaKnown RBP4.78□□□□□ -1.64
LIMA1-215ENST00000552823 PIK3IP1Q96FE7 263 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms