RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 TMED6Q8WW62 240 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 MARVELD3Q96A59 401 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 SARAFQ96BY9 339 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 MRPS24Q96EL2 167 aaKnown RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 OR51I2Q9H344 312 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 EDARQ9UNE0 448 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 LHX6Q9UPM6 363 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 A6NLC8 198 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 RRP8O43159 456 aaKnown RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 LRP3O75074 770 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 TNFSF13O75888 250 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 GLP1RP43220 463 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 SRSF4Q08170 494 aaKnown RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 IZUMO4Q1ZYL8 232 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 RGS7BPQ6MZT1 257 aaPredicted RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 TPRX1Q8N7U7 411 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 STARD4Q96DR4 205 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 KIRREL1Q96J84 757 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 RYDENQ9NUL5 291 aaKnown RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 OR1A1Q9P1Q5 309 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 A0A0D9SG52 128 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 hCG_1807616A0A1W2PRN6 198 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 CDK2AP1O14519 115 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 AQP7O14520 342 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 CA11O75493 328 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 GNRHRP30968 328 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 EIF2S3P41091 472 aaKnown RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 ZNF83P51522 516 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 PPA1Q15181 289 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 RTL6Q6ICC9 239 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 ZNF818PQ6ZRF7 136 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 C22orf34Q6ZV56 151 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 ZNF573Q86YE8 665 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 GAPTQ8N292 157 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 PLPPR1Q8TBJ4 325 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 GLYATL2Q8WU03 294 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 RBPMSQ93062 196 aaKnown RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 C2orf50Q96LR7 162 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 TECTBQ96PL2 329 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 REG4Q9BYZ8 158 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 NMES1Q9C002 83 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 NAA60Q9H7X0 242 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 Q9N2K0 584 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 CCL28Q9NRJ3 127 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 MED19A0JLT2 244 aaPredicted RBP9.42□□□□□ -0.9
CUX1-212ENST00000547394 DEGS1O15121 323 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 MLNRO43193 412 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 OR2F2O95006 317 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 NXPH2O95156 264 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 OR2F1Q13607 317 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 LRP11Q86VZ4 500 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 STPG2Q8N412 459 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 FAM117AQ9C073 453 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 C1orf123Q9NWV4 160 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 DUSP13Q9UII6 198 aa9.42□□□□□ -0.9
CUX1-212ENST00000547394 NAPSAO96009 420 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 TMEM187Q14656 261 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 GUSBP1Q15486 140 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 OR8G1Q15617 311 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 MSMPQ1L6U9 139 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 TMEM211Q6ICI0 200 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 RBMXL3Q8N7X1 1067 aaKnown RBP9.41□□□□□ -0.9
CUX1-212ENST00000547394 MRPL30Q8TCC3 161 aaKnown RBP9.41□□□□□ -0.9
CUX1-212ENST00000547394 MOB3AQ96BX8 217 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 PLPPR2Q96GM1 343 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 ARPC5LQ9BPX5 153 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 PROB1E7EW31 1015 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 OR2H2O95918 312 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 ATF4P18848 351 aaPredicted RBP9.41□□□□□ -0.9
CUX1-212ENST00000547394 PAN3Q58A45 887 aaKnown RBP9.41□□□□□ -0.9
CUX1-212ENST00000547394 SPRNQ5BIV9 151 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 TMEM268Q5VZI3 342 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 PDZD9Q8IXQ8 264 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 SLC35G3Q8N808 338 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 OR51H1Q8NH63 302 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 SNIP1Q8TAD8 396 aaKnown RBP9.41□□□□□ -0.9
CUX1-212ENST00000547394 MAGT1Q9H0U3 335 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 PCDHB16Q9NRJ7 776 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 MPC1Q9Y5U8 109 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 USF3Q68DE3 2245 aa9.41□□□□□ -0.9
CUX1-212ENST00000547394 ASH1LQ9NR48 2969 aaKnown RBP9.4□□□□□ -0.9
CUX1-212ENST00000547394 TSPAN4O14817 238 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 TIMM8AO60220 97 aaPredicted RBP9.4□□□□□ -0.9
CUX1-212ENST00000547394 FBXO24O75426 580 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 SLC34A2O95436 690 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 TK1P04183 234 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 RPL7L1Q6DKI1 246 aaKnown RBP9.4□□□□□ -0.9
CUX1-212ENST00000547394 Q6ZR03 302 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 TBC1D26Q86UD7 250 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 WNT2BQ93097 391 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 RBMXL1Q96E39 390 aaKnown RBP9.4□□□□□ -0.9
CUX1-212ENST00000547394 SLC5A7Q9GZV3 580 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 ASF1BQ9NVP2 202 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 RASL12Q9NYN1 266 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 TREM2Q9NZC2 230 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 FBXO9Q9UK97 447 aaPredicted RBP9.4□□□□□ -0.9
CUX1-212ENST00000547394 PROCRQ9UNN8 238 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 FAM215AQ9Y5M1 114 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 DCHS2Q6V1P9 2916 aa9.4□□□□□ -0.9
CUX1-212ENST00000547394 MBPP02686 304 aaPredicted RBP9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms