RNA–Protein interactions for RNA: ENST00000547374.5

BRF1-210, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 5

Gene BRF1, Length 3,809 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-210	ENST00000547374	TGIF2-C20orf24	A0A0A6YYL0	155 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	RBFOX3	A6NFN3	312 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	TRAPPC2L	H3BP13	241 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	TUSC2	O75896	110 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	IFNA5	P01569	189 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	MPZ	P25189	248 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	B2M	P61769	119 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	COL19A1	Q14993	1142 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	HLA-C	Q95604	372 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	PLA2G3	Q9NZ20	509 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	NGF	P01138	241 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	FOLR3	P41439	243 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	SUCLG1	P53597	346 aa	Known RBP	11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	DSCR4	P56555	118 aa	Predicted RBP	11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	RND3	P61587	244 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	DLK1	P80370	383 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	NIPSNAP3B	Q9BS92	247 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	TMPRSS5	Q9H3S3	457 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	TIMM10B	Q9Y5J6	103 aa		11.22	□□□□□ -0.61
BRF1-210	ENST00000547374	CEBPZOS	A8MTT3	80 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ZNF880	Q6PDB4	577 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ZNF818P	Q6ZRF7	136 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	TMEM252	Q8N6L7	170 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	IL22RA1	Q8N6P7	574 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	PSMF1	Q92530	271 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	NABP1	Q96AH0	204 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	SPSB1	Q96BD6	273 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	INTS12	Q96CB8	462 aa	Known RBP	11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	RHOV	Q96L33	236 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	HSF4	Q9ULV5	492 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	HS3ST3B1	Q9Y662	390 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	TMEM131	Q92545	1883 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	SPTA1	P02549	2419 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	IGKV1D-13	A0A0B4J2D9	117 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374		A0A0U1RQV5	110 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	IGKV1-13	P0DP09	117 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	MLF1	P58340	268 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ARF1	P84077	181 aa	Known RBP	11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ZNF266	Q14584	549 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	SURF2	Q15527	256 aa	Predicted RBP	11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ZNF239	Q16600	458 aa	Known RBP	11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	GFI1B	Q5VTD9	330 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	TCEAL6	Q6IPX3	200 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	CXorf67	Q86X51	503 aa	Predicted RBP	11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	KMT5C	Q86Y97	462 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	MCEMP1	Q8IX19	187 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	MKX	Q8IYA7	352 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ZIC4	Q8N9L1	334 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ZDHHC8	Q9ULC8	765 aa		11.21	□□□□□ -0.61
BRF1-210	ENST00000547374	ADAMTS9	Q9P2N4	1935 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	CACNA1H	O95180	2353 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	SIRPB1	O00241	398 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	NKX6-1	P78426	367 aa	Predicted RBP	11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	RAB35	Q15286	201 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	HIST2H3PS2	Q5TEC6	136 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	LHFPL2	Q6ZUX7	228 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	HES7	Q9BYE0	225 aa		11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	UBE2Z	Q9H832	354 aa	Predicted RBP	11.21	□□□□□ -0.62
BRF1-210	ENST00000547374	AP4M1	O00189	453 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	SYNGR1	O43759	233 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	VAMP5	O95183	116 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	TRGC2	P03986	189 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	PLGLB1	Q02325	96 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	PCOLCE	Q15113	449 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	ZNF808	Q8N4W9	903 aa	Predicted RBP	11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	AGBL5	Q8NDL9	886 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	TOLLIP	Q9H0E2	274 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	FBLN5	Q9UBX5	448 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	PISD	Q9UG56	409 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	STARD10	Q9Y365	291 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	CBR3	O75828	277 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	SCAF4	O95104	1147 aa	Known RBP	11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	SLC34A2	O95436	690 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	SEC11B	P0C7V7	166 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	FABP4	P15090	132 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	FAM27B	Q5VT28	67 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	CDPF1	Q6NVV7	123 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	RPUSD4	Q96CM3	377 aa	Known RBP	11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	TMEM38B	Q9NVV0	291 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	PKDREJ	Q9NTG1	2253 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374		A0A0U1RQK1	487 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	IGHV3-13	P01766	116 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	IGHV3-7	P01780	117 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	EPHA8	P29322	1005 aa	Predicted RBP	11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	EIF2S3	P41091	472 aa	Known RBP	11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	RPS23	P62266	143 aa	Known RBP	11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	RAC1	P63000	192 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	PRDX4	Q13162	271 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	ADIRF	Q15847	76 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	RTL6	Q6ICC9	239 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	TMEM171	Q8WVE6	324 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	GPR61	Q9BZJ8	451 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374		V9GYS6	101 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	MED13	Q9UHV7	2174 aa		11.2	□□□□□ -0.62
BRF1-210	ENST00000547374	GAPDH	P04406	335 aa	Known RBP	11.19	□□□□□ -0.62
BRF1-210	ENST00000547374	FUT6	P51993	359 aa		11.19	□□□□□ -0.62
BRF1-210	ENST00000547374	HOXA4	Q00056	320 aa	Predicted RBP	11.19	□□□□□ -0.62
BRF1-210	ENST00000547374	USF2	Q15853	346 aa	Predicted RBP	11.19	□□□□□ -0.62
BRF1-210	ENST00000547374	CRIP3	Q6Q6R5	217 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms