RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 PAFAH1B2P68402 229 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 SLC35B1P78383 322 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 LY6DQ14210 128 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 C4orf17Q53FE4 359 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ARHGEF39Q8N4T4 335 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF418Q8TF45 676 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 TMED6Q8WW62 240 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PLA2G12AQ9BZM1 189 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF835Q9Y2P0 537 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 MPC1Q9Y5U8 109 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 KIF26BQ2KJY2 2108 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PLCE1Q9P212 2302 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CENPVL1A0A0U1RR11 272 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 TCF21O43680 179 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 HBE1P02100 147 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CYC1P08574 325 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 COX5BP10606 129 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 NME2P22392 152 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 RAB7AP51149 207 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CCDC144NLQ6NUI1 221 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ACSM6Q6P461 480 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 SMAP2Q8WU79 429 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 MISP3Q96FF7 219 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CIB3Q96Q77 187 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 DIRC2Q96SL1 478 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 MESP1Q9BRJ9 268 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PPP1R3EQ9H7J1 279 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 DNAJB12Q9NXW2 375 aaKnown RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PSG11Q9UQ72 335 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 INSIG2Q9Y5U4 225 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PKDREJQ9NTG1 2253 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PRSS47A8MTI9 375 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CCR9P51686 369 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF788Q6ZQV5 615 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 OR2W3Q7Z3T1 314 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 OR5R1Q8NH85 324 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 HGDQ93099 445 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 KCNK17Q96T54 332 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CHST6Q9GZX3 395 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 KCNK7Q9Y2U2 307 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 KLF2Q9Y5W3 355 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PUS1Q9Y606 427 aaKnown RBP eCLIP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 AUP1Q9Y679 476 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 USF3Q68DE3 2245 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 MED13LQ71F56 2210 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PPIAL4EA0A075B759 164 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PPIAL4DF5H284 164 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 IGHV2-70P01814 119 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ARG1P05089 322 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PPIAL4FP0DN26 164 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF816Q0VGE8 651 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 HIKESHIQ53FT3 197 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ASCL5Q7RTU5 278 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 SYS1Q8N2H4 156 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ZFP62Q8NB50 900 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 SUMF2Q8NBJ7 301 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 TERB2Q8NHR7 220 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 FAM213BQ8TBF2 198 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 C14orf144Q96I85 54 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 VSTM2LQ96N03 204 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 ABHD1Q96SE0 405 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 HSD17B10Q99714 261 aaKnown RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CCL19Q99731 98 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 SLC25A21Q9BQT8 299 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-218ENST00000545889 AUNIPQ9H7T9 357 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 MSL2Q9HCI7 577 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 CA10Q9NS85 328 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 PPIAL4AQ9Y536 164 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 TIMM9Q9Y5J7 89 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 MYO7BQ6PIF6 2116 aa7.56□□□□□ -1.2
CLIP1-218ENST00000545889 A0A0D9SG52 128 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 C7orf66A4D0T2 115 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 EPPINO95925 133 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 PF4P02776 101 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 SLC37A1P57057 533 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF85Q03923 595 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 TLE4Q04727 773 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 GAMTQ14353 236 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 PDCD1Q15116 288 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 DMRTA1Q5VZB9 504 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 FDCSPQ8NFU4 85 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 PARP12Q9H0J9 701 aaKnown RBP7.55□□□□□ -1.2
CLIP1-218ENST00000545889 YAE1D1Q9NRH1 226 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 LRRK1Q38SD2 2015 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 A0A1B0GWJ7 208 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF705FA8MVS1 300 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-218ENST00000545889 IMPA2O14732 288 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 KRASP01116 189 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF705DP0CH99 300 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-218ENST00000545889 ZNF705BP0CI00 300 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-218ENST00000545889 PKIAP61925 76 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 DOC2BQ14184 412 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 TRAT1Q6PIZ9 186 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 C15orf54Q8N8G6 183 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 TXN2Q99757 166 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 GABARAPL1Q9H0R8 117 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 GPR27Q9NS67 375 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 STRAPQ9Y3F4 350 aaKnown RBP7.55□□□□□ -1.2
CLIP1-218ENST00000545889 MMP24Q9Y5R2 645 aa7.55□□□□□ -1.2
CLIP1-218ENST00000545889 A0A1W2PN81 502 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms