RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TDGF1P3P51864 188 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 HERV-K104P61576 105 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 SRSF4Q08170 494 aaKnown RBP12.31□□□□□ -0.44
CLIP1-216ENST00000541410 Q6P435 159 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 SECTM1Q8WVN6 248 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 IL1F10Q8WWZ1 152 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 SNRNP40Q96DI7 357 aaKnown RBP12.31□□□□□ -0.44
CLIP1-216ENST00000541410 FAM210AQ96ND0 272 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 DECR2Q9NUI1 292 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 ASF1BQ9NVP2 202 aa12.31□□□□□ -0.44
CLIP1-216ENST00000541410 RP2O75695 350 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 SLC34A2O95436 690 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 IFNA7P01567 189 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 CRHP06850 196 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 ZNF718Q3SXZ3 478 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 PAN3Q58A45 887 aaKnown RBP12.3□□□□□ -0.44
CLIP1-216ENST00000541410 GFRALQ6UXV0 394 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 PLPPR1Q8TBJ4 325 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 PLK3Q9H4B4 646 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 UBQLN2Q9UHD9 624 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 RAXQ9Y2V3 346 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 KALRNO60229 2985 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 IGKV1D-13A0A0B4J2D9 117 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 A0A0G2JNJ9 132 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 hCG_1807616A0A1W2PRN6 198 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 H0YIZ8 118 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 IGKV1-13P0DP09 117 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 RPA2P15927 270 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 FGL1Q08830 312 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 C11orf53Q8IXP5 236 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 THAP6Q8TBB0 222 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 MRPL24Q96A35 216 aaKnown RBP12.3□□□□□ -0.44
CLIP1-216ENST00000541410 MOB3AQ96BX8 217 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 VRK1Q99986 396 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-216ENST00000541410 SYT3Q9BQG1 590 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 NRIP2Q9BQI9 281 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 BCL2L14Q9BZR8 327 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 Q9UFV3 132 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 POLDIP2Q9Y2S7 368 aa12.3□□□□□ -0.44
CLIP1-216ENST00000541410 RNF222A6NCQ9 220 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 PGA5P0DJD9 388 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 PSMB6P28072 239 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 CEACAM8P31997 349 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-216ENST00000541410 ERVK11-1P61568 191 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 SPRNQ5BIV9 151 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 SPIN3Q5JUX0 258 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 OR2Z1Q8NG97 314 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 BOD1Q96IK1 185 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 RAB18Q9NP72 206 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 TNFSF18Q9UNG2 199 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 AMDHD2Q9Y303 409 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 MSRB2Q9Y3D2 182 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 MAB21L2Q9Y586 359 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 POLEQ07864 2286 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 ANKRD34BA5PLL1 514 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 SLC33A1O00400 549 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-216ENST00000541410 PRRG2O14669 202 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 S100A1P23297 94 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 S100A10P60903 97 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 RAB32Q13637 225 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 RBM39Q14498 530 aaKnown RBP12.29□□□□□ -0.44
CLIP1-216ENST00000541410 RGS7BPQ6MZT1 257 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-216ENST00000541410 DCUN1D4Q92564 292 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 MUCL1Q96DR8 90 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 KIRREL1Q96J84 757 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 RNF126Q9BV68 326 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 OR5AC2Q9NZP5 309 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 CHD8Q9HCK8 2581 aa12.29□□□□□ -0.44
CLIP1-216ENST00000541410 TRDCB7Z8K6 153 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 ATP6V1G2-DDX39BF2Z307 99 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 TEX46H3BTG2 121 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 HSD17B6O14756 317 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 TNFSF12O43508 249 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 TK1P04183 234 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 PMELP40967 661 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 IL13RA2Q14627 380 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 TIMM23BQ5SRD1 257 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 MEX3BQ6ZN04 569 aaKnown RBP12.28□□□□□ -0.44
CLIP1-216ENST00000541410 ASB13Q8WXK3 278 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 RRNAD1Q96FB5 475 aaKnown RBP12.28□□□□□ -0.44
CLIP1-216ENST00000541410 C1orf123Q9NWV4 160 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 RASL12Q9NYN1 266 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 ATP23Q9Y6H3 246 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 RPS10-NUDT3A0A1W2PQS6 291 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 A8MXE2 369 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 PHF1O43189 567 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-216ENST00000541410 PSPNO60542 156 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 C4BPBP20851 252 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 GNRHRP30968 328 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 ECI1P42126 302 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 UNQ6126/PRO20091Q6UXV3 157 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 BOLLQ8N9W6 283 aaKnown RBP12.28□□□□□ -0.44
CLIP1-216ENST00000541410 SFXN3Q9BWM7 321 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 NMES1Q9C002 83 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 NAA60Q9H7X0 242 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 SPACA1Q9HBV2 294 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 PKDREJQ9NTG1 2253 aa12.28□□□□□ -0.44
CLIP1-216ENST00000541410 COL6A6A6NMZ7 2263 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 RLN2P04090 185 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 IAH1Q2TAA2 248 aaPredicted RBP12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms