RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 FAM27D1Q5T7N8 215 aa9.09□□□□□ -0.95
CLSTN3-209ENST00000539982 ZNF322Q6U7Q0 402 aaPredicted RBP9.09□□□□□ -0.95
CLSTN3-209ENST00000539982 CBR4Q8N4T8 237 aa9.09□□□□□ -0.95
CLSTN3-209ENST00000539982 ZNF184Q99676 751 aaPredicted RBP9.09□□□□□ -0.95
CLSTN3-209ENST00000539982 PLEKHA1Q9HB21 404 aa9.09□□□□□ -0.95
CLSTN3-209ENST00000539982 ODAMA1E959 279 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 CCDC182A6NF36 153 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 H0YJX3 145 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 J3QR06 171 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 EI24O14681 340 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 OR2H2O95918 312 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 CYB5AP00167 134 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 IGKV1D-33P01593 117 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 IGKV1-33P01594 117 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 OSMP13725 252 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 GPR12P47775 334 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 RAB7AP51149 207 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 ATP1B3P54709 279 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 AQP4P55087 323 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 SNU13P55769 128 aaKnown RBP9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 CXCR4P61073 352 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 MADCAM1Q13477 382 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 EBI3Q14213 229 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 DIAPH2-AS1Q14236 149 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 ADAMTSL5Q6ZMM2 481 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 PLEKHG7Q6ZR37 379 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 TMEM179BQ7Z7N9 219 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 ZNF429Q86V71 674 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 OR8H3Q8N146 312 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 DNAAF1Q8NEP3 725 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 OR11H1Q8NG94 326 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 C4orf3Q8WVX3 66 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 DNAJC9Q8WXX5 260 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 SLC29A1Q99808 456 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 OSBPL10Q9BXB5 764 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 TEX12Q9BXU0 123 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 GABARAPL1Q9H0R8 117 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 ABCG5Q9H222 651 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 HMG20AQ9NP66 347 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 EXOSC4Q9NPD3 245 aaKnown RBP9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 GSTK1Q9Y2Q3 226 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 STARD9Q9P2P6 4700 aa9.08□□□□□ -0.96
CLSTN3-209ENST00000539982 KBTBD11-OT1A0A1B0GTJ5 212 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 NCBP2LA6PVI3 153 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 SYT7O43581 403 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 CSN2P05814 226 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 CGB3P0DN86 165 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 CGB7P0DN87 165 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 HSPA13P48723 471 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 RBP2P50120 134 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 ALDH3A2P51648 485 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 ODF4Q2M2E3 257 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 KRBOX4Q5JUW0 171 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 TGIF2LXQ8IUE1 241 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 HS3ST5Q8IZT8 346 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 ZNF565Q8N9K5 539 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 CCDC54Q8NEL0 328 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 HAVCR2Q8TDQ0 301 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 ISOC1Q96CN7 298 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 RNFT2Q96EX2 444 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 KIRREL1Q96J84 757 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 CNN2Q99439 309 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 MNTQ99583 582 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 CHST5Q9GZS9 411 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 EDA2RQ9HAV5 297 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 LIN7CQ9NUP9 197 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 MRM2Q9UI43 246 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 LRRC42Q9Y546 428 aa9.07□□□□□ -0.96
CLSTN3-209ENST00000539982 H3BSH0 61 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 IGHV3-7P01780 117 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 IGHG4P01861 327 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 ALPLP05186 524 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 HCKP08631 526 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 OR8U8P0C7N1 319 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 PRKACGP22612 351 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 POU3F4P49335 361 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 MTCP1P56278 107 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 SCN1BQ07699 218 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 TMEM236Q5W0B7 351 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 CHST4Q8NCG5 386 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 OR1N2Q8NGR9 330 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 LEAP2Q969E1 77 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 C10orf35Q96D05 121 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 COQ2Q96H96 371 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 EAF1Q96JC9 268 aaPredicted RBP9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 TM2D3Q9BRN9 247 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 ADI1Q9BV57 179 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 COMMD4Q9H0A8 199 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 SLC25A19Q9HC21 320 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 KRT84Q9NSB2 600 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 ING3Q9NXR8 418 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 TVP23BQ9NYZ1 205 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 OR6C3Q9NZP0 311 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 PSG11Q9UQ72 335 aa9.06□□□□□ -0.96
CLSTN3-209ENST00000539982 ZNF670-ZNF695F2Z2N8 137 aa9.05□□□□□ -0.96
CLSTN3-209ENST00000539982 MPZL2O60487 215 aa9.05□□□□□ -0.96
CLSTN3-209ENST00000539982 RPP14O95059 124 aaKnown RBP9.05□□□□□ -0.96
CLSTN3-209ENST00000539982 ZNF44P15621 663 aa9.05□□□□□ -0.96
CLSTN3-209ENST00000539982 PSMB8P28062 276 aa9.05□□□□□ -0.96
CLSTN3-209ENST00000539982 VEGFCP49767 419 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms