RNA–Protein interactions for RNA: ENST00000539712.5

DDB1-215, Transcript of damage specific DNA binding protein 1, human

TSL 2

Gene DDB1, Length 1,020 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-215	ENST00000539712	LINC00574	Q9H8X3	128 aa		13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	C8orf4	Q9NR00	106 aa		13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	ABCB10	Q9NRK6	738 aa		13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	ING3	Q9NXR8	418 aa		13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	DPM3	Q9P2X0	92 aa		13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	ZNF281	Q9Y2X9	895 aa		13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	EXOSC1	Q9Y3B2	195 aa	Known RBP	13.46	□□□□□ -0.25
DDB1-215	ENST00000539712	TET2	Q6N021	2002 aa	Predicted RBP	13.46	□□□□□ -0.26
DDB1-215	ENST00000539712	DNAH3	Q8TD57	4116 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	IRGM	A1A4Y4	181 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	CDRT1	O95170	752 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	IGFBP3	P17936	291 aa	Predicted RBP	13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	PAX5	Q02548	391 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	SLC34A1	Q06495	639 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	IL13RA2	Q14627	380 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	C2orf68	Q2NKX9	166 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	OR52W1	Q6IF63	320 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	RTN4RL2	Q86UN3	420 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	OR52N1	Q8NH53	320 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	FAM110D	Q8TAY7	271 aa	Predicted RBP	13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	NDNF	Q8TB73	568 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	PLPPR1	Q8TBJ4	325 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	PGLYRP3	Q96LB9	341 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	WNT10A	Q9GZT5	417 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	TMEM138	Q9NPI0	162 aa		13.45	□□□□□ -0.26
DDB1-215	ENST00000539712	KBTBD11-OT1	A0A1B0GTJ5	212 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	MAGEA13P	A6NCF6	341 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	ZNF729	A6NN14	1252 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	HSPB6	O14558	160 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	CASQ2	O14958	399 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	GPX5	O75715	221 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	CD2	P06729	351 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	VSIG10L2	P0DP72	767 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	CD24	P25063	80 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	ST3GAL4	Q11206	333 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	PDLIM3	Q53GG5	364 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	PAN3	Q58A45	887 aa	Known RBP	13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	OGFRL1	Q5TC84	451 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	RSBN1	Q5VWQ0	802 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-215	ENST00000539712		Q6ZTK2	550 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	ZFP41	Q8N8Y5	198 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	SETD9	Q8NE22	299 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	OR13A1	Q8NGR1	328 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	KIRREL1	Q96J84	757 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	GPER1	Q99527	375 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	IL36G	Q9NZH8	169 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	OR6C3	Q9NZP0	311 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	KIF25	Q9UIL4	384 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	PITPNC1	Q9UKF7	332 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	HSPE1-MOB4	S4R3N1	261 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	NOTCH3	Q9UM47	2321 aa		13.44	□□□□□ -0.26
DDB1-215	ENST00000539712	TRAV8-7	A0A075B6U6	113 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	TRBV5-7	A0A0A0MS05	114 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	BUB1B-PAK6	H3BSN5	160 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	F2RL2	O00254	374 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	MAGEB3	O15480	346 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	XPNPEP2	O43895	674 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	CSF1	P09603	554 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	MYL12A	P19105	171 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	CAPG	P40121	348 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	RSU1	Q15404	277 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	NHLRC3	Q5JS37	347 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	ZNF596	Q8TC21	504 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	CPNE2	Q96FN4	548 aa	Predicted RBP	13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	OCSTAMP	Q9BR26	566 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	IFT22	Q9H7X7	185 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	PSORS1C1	Q9UIG5	152 aa		13.43	□□□□□ -0.26
DDB1-215	ENST00000539712	MEIKIN	A0A087WXM9	373 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	LEUTX	A8MZ59	168 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	NPIPB11	E5RHQ5	1161 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	ANKRD65	E5RJM6	399 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	HTR3B	O95264	441 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	CD28	P10747	220 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	C21orf33	P30042	268 aa	Predicted RBP	13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	BDKRB2	P30411	391 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	ZNF93	P35789	620 aa	Predicted RBP	13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	HLA-DRB5	Q30154	266 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	TMEM95	Q3KNT9	176 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	DDI2	Q5TDH0	399 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	LYPD6	Q86Y78	171 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	DTX3	Q8N9I9	347 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	OR4D6	Q8NGJ1	314 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	PRSS22	Q9GZN4	317 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	FAM192A	Q9GZU8	254 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	PLCXD1	Q9NUJ7	323 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	CALY	Q9NYX4	217 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	ING4	Q9UNL4	249 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	ST3GAL6	Q9Y274	331 aa		13.42	□□□□□ -0.26
DDB1-215	ENST00000539712	TRAV39	A0A0B4J263	110 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712		A0A1W2PP11	408 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	ADARB2-AS1	A8MUL3	147 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	AMY1A	P04745	511 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	AMY2A	P04746	511 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	RBM11	P57052	281 aa	Known RBP	13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	PPP3R1	P63098	170 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712		Q499Y3	187 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	YIF1B	Q5BJH7	314 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	TPTE2P1	Q5T6R2	138 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	ZNF565	Q8N9K5	539 aa		13.41	□□□□□ -0.26
DDB1-215	ENST00000539712	SUMF2	Q8NBJ7	301 aa		13.41	□□□□□ -0.26

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