RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LHBP01229 141 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 PAN3Q58A45 887 aaKnown RBP17.83■□□□□ 0.44
VPS28-212ENST00000530836 RDH5Q92781 318 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 NEUROG1Q92886 237 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 GCM1Q9NP62 436 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 DYNLRB1Q9NP97 96 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 RNF7Q9UBF6 113 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 ROS1P08922 2347 aa17.83■□□□□ 0.44
VPS28-212ENST00000530836 TRAPPC2P0DI81 140 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 TRAPPC2BP0DI82 140 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 KCNJ3P48549 501 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 CDK10Q15131 360 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 SCGB2B2Q4G0G5 96 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 OVCH2Q7RTZ1 564 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 MED30Q96HR3 178 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 PPA2Q9H2U2 334 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 DECR2Q9NUI1 292 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 MGAT4AQ9UM21 535 aa17.82■□□□□ 0.44
VPS28-212ENST00000530836 LRBAP50851 2863 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 C7orf66A4D0T2 115 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 LRRC30A6NM36 301 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 WNT9BO14905 357 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 ARPC1BO15143 372 aaKnown RBP17.81■□□□□ 0.44
VPS28-212ENST00000530836 CSN2P05814 226 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 IRF2P14316 349 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 GMFBP60983 142 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 TSPAN5P62079 268 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 GCSAMQ8N6F7 178 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 DYRK2Q92630 601 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 LURAP1Q96LR2 239 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 WDR13Q9H1Z4 485 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 NECAP2Q9NVZ3 263 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 PPP1R3CQ9UQK1 317 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 ALG5Q9Y673 324 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 CACNA1DQ01668 2161 aa17.81■□□□□ 0.44
VPS28-212ENST00000530836 NOTCH2Q04721 2471 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 A0A0B4J293 547 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 KIR2DS1A0A191URI9 304 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 ECI1P42126 302 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 KIR2DS4P43632 304 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 RAB25P57735 213 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 KIR2DS1Q14954 304 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 MUC15Q8N387 334 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 ZDHHC22Q8N966 263 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 TERB2Q8NHR7 220 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 CYYR1Q96J86 154 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 SCGB3A2Q96PL1 93 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 ALX4Q9H161 411 aaPredicted RBP17.8■□□□□ 0.44
VPS28-212ENST00000530836 UBTD1Q9HAC8 227 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 Q9N2K0 584 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 EHFQ9NZC4 300 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 DNAJB11Q9UBS4 358 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 OR14J1Q9UGF5 321 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 SPG11Q96JI7 2443 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 SIRPB1O00241 398 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 HSPB6O14558 160 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 IL5P05113 134 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 SNRPD2P62316 118 aaKnown RBP17.8■□□□□ 0.44
VPS28-212ENST00000530836 MST1LQ2TV78 715 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 METTL11BQ5VVY1 283 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 MOB1BQ7L9L4 216 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 GAPTQ8N292 157 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 CCDC107Q8WV48 283 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 MAFIPQ8WZ33 124 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 NRGNQ92686 78 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 LIME1Q9H400 295 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 SAP30LQ9HAJ7 183 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 TMEM165Q9HC07 324 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 WIPI2Q9Y4P8 454 aa17.8■□□□□ 0.44
VPS28-212ENST00000530836 HMX3A6NHT5 357 aa17.79■□□□□ 0.44
VPS28-212ENST00000530836 SWI5Q1ZZU3 235 aa17.79■□□□□ 0.44
VPS28-212ENST00000530836 OR13C8Q8NGS7 320 aa17.79■□□□□ 0.44
VPS28-212ENST00000530836 GIMAP1Q8WWP7 306 aa17.79■□□□□ 0.44
VPS28-212ENST00000530836 GPN1Q9HCN4 374 aaPredicted RBP17.79■□□□□ 0.44
VPS28-212ENST00000530836 MYOZ1Q9NP98 299 aaPredicted RBP17.79■□□□□ 0.44
VPS28-212ENST00000530836 FLVCR2Q9UPI3 526 aa17.79■□□□□ 0.44
VPS28-212ENST00000530836 TMEM82A0PJX8 343 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 RFPL4AA6NLU0 287 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 RFPL4AL1F8VTS6 287 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 RLN1P04808 185 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 CTXN2P0C2S0 81 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 PRDX2P32119 198 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 CCL8P80075 99 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 SPRNQ5BIV9 151 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 ZNF497Q6ZNH5 498 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 C20orf204Q6ZNR8 217 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 C1orf87Q8N0U7 546 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 OR6F1Q8NGZ6 308 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 PPP1R35Q8TAP8 253 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 NEURL2Q9BR09 285 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 GHITMQ9H3K2 345 aa17.78■□□□□ 0.44
VPS28-212ENST00000530836 IGKV1D-8A0A087WSZ0 117 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 A0A0A6YYJ9 748 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 OR2AT4A6NND4 320 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 CEACAM18A8MTB9 384 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.77■□□□□ 0.44
VPS28-212ENST00000530836 PAX5Q02548 391 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 SURF2Q15527 256 aaPredicted RBP17.77■□□□□ 0.44
VPS28-212ENST00000530836 ZNF880Q6PDB4 577 aa17.77■□□□□ 0.44
VPS28-212ENST00000530836 AKAP14Q86UN6 197 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms