RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 LYZL4Q96KX0 146 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 GPHA2Q96T91 129 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 SLC2A9Q9NRM0 540 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 GLRX2Q9NS18 164 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 GPR173Q9NS66 373 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 DECR2Q9NUI1 292 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 SERPINE3A8MV23 424 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 IFNL4K9M1U5 179 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 M0R135 149 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 TNFSF11O14788 317 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 TNFSF12O43508 249 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 DUSP1P28562 367 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 RPL23AP62750 156 aaKnown RBP12.28□□□□□ -0.44
USP48-213ENST00000529637 HLA-DRB3P79483 266 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 OR2C3Q8N628 320 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 OR13D1Q8NGV5 346 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 CLDND2Q8NHS1 167 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 ZNF799Q96GE5 643 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 NDUFAF3Q9BU61 184 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 SMDT1Q9H4I9 107 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 SIRT7Q9NRC8 400 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 WNT16Q9UBV4 365 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 PHF1O43189 567 aaPredicted RBP12.28□□□□□ -0.44
USP48-213ENST00000529637 NR2C1P13056 603 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 CCL4P13236 92 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 IL13RA2Q14627 380 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 FAM189A2Q15884 450 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 TAF9Q16594 264 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 LIAT1Q6ZQX7 453 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 IFI44Q8TCB0 444 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 HAS2Q92819 552 aa12.28□□□□□ -0.44
USP48-213ENST00000529637 EXPH5Q8NEV8 1989 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 PROB1E7EW31 1015 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 K7ESF4 209 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 DHHO43323 396 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 MTCP1P56278 107 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 RAB11AP62491 216 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 DNLZQ5SXM8 178 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 ODF3L1Q8IXM7 274 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 ADPRHL1Q8NDY3 354 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 OR5C1Q8NGR4 320 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 OR4X1Q8NH49 305 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 OR14L1PQ8NHC6 308 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 ZNF837Q96EG3 531 aaPredicted RBP12.27□□□□□ -0.44
USP48-213ENST00000529637 TP53RKQ96S44 253 aa12.27□□□□□ -0.44
USP48-213ENST00000529637 NCOR1O75376 2440 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 NKX2-6A6NCS4 301 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 PATE4P0C8F1 98 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 CD200P41217 278 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 ZNF506Q5JVG8 444 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 WDR25Q64LD2 544 aaPredicted RBP12.27□□□□□ -0.45
USP48-213ENST00000529637 SLC22A25Q6T423 547 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 C1orf87Q8N0U7 546 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 DDA1Q9BW61 102 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 GPR87Q9BY21 358 aa12.27□□□□□ -0.45
USP48-213ENST00000529637 IGLV3-32A0A0A0MS00 114 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 ETV2O00321 342 aaPredicted RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 HSPB1P04792 205 aaKnown RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 TNFRSF9Q07011 255 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 ZFP36L1Q07352 338 aaKnown RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 FOXO1Q12778 655 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 PCOLCEQ15113 449 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 YRDCQ86U90 279 aaKnown RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 OR4D5Q8NGN0 318 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 HLA-CQ95604 372 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 KIAA2026Q5HYC2 2103 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 RRP8O43159 456 aaKnown RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 DHRS3O75911 302 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 TMEM50AO95807 157 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 LCATP04180 440 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 FGF7P21781 194 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 PLA2G5P39877 138 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 SSR4P51571 173 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 GNMTQ14749 295 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 PDCD1Q15116 288 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 CXorf66Q5JRM2 361 aaPredicted RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 FAM90A2PQ658T7 463 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 SLC35E3Q7Z769 313 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 SAP25Q8TEE9 199 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 GNG13Q9P2W3 67 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 LY6G6EA0A0G2JKS1 128 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 SPRY1O43609 319 aaPredicted RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 SSSCA1O60232 199 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 TRAPPC6AO75865 159 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 CEACAM6P40199 344 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 CD81P60033 236 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 CLEC12BQ2HXU8 276 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 MPV17LQ2QL34 196 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 LBHQ53QV2 105 aaPredicted RBP12.26□□□□□ -0.45
USP48-213ENST00000529637 BATF2Q8N1L9 274 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 NAT6Q93015 286 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 SPTSSAQ969W0 71 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 SNHG12Q9BXW3 62 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 U3KQA8 63 aa12.26□□□□□ -0.45
USP48-213ENST00000529637 MMP7P09237 267 aaPredicted RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 DYNLT3P51808 116 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 COL10A1Q03692 680 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 TLE1Q04724 770 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 RPS19BP1Q86WX3 136 aaKnown RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 FADS6Q8N9I5 356 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms