RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RNF167Q9H6Y7 350 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CACYBPQ9HB71 228 aaKnown RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 FGF20Q9NP95 211 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 SLCO1B3Q9NPD5 702 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ACP6Q9NPH0 428 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 FBXO6Q9NRD1 293 aaPredicted RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 SLC7A10Q9NS82 523 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 MED9Q9NWA0 146 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 LSM7Q9UK45 103 aaKnown RBP2.5□□□□□ -2.01
CD44-229ENST00000528672 SAR1BQ9Y6B6 198 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 PCM1Q15154 2024 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CAMSAP2Q08AD1 1489 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 ABCC10Q5T3U5 1492 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 CD109Q6YHK3 1445 aa2.5□□□□□ -2.01
CD44-229ENST00000528672 KTN1Q86UP2 1357 aaKnown RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 WNK3Q9BYP7 1800 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 IGLV8-61A0A075B6I0 122 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 IGLV3-22A0A075B6J6 115 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 IGHV7-81A0A0B4J1V7 117 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 EXOC1LA0A1B0GW35 172 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 A0A1W2PRE2 83 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 ARL5CA6NH57 179 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 FAM159BA6NKW6 160 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PLPP1O14494 284 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SYNGR1O43759 233 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 GNG7O60262 68 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 MPDU1O75352 247 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 STK16O75716 305 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 MMP23AO75900 390 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CLIC3O95833 236 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CRYGDP07320 174 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PVALBP20472 110 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 KDELR1P24390 212 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 HTR1DP28221 377 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SULT1A1P50225 295 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SULT1A2P50226 295 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PIGPP57054 158 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 RAB8AP61006 207 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 NCALDP61601 193 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 RHOBP62745 196 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PAFAH1B2P68402 229 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 MRPS10P82664 201 aaKnown RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 MXD1Q05195 221 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 BAXQ07812 192 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 INCA1Q0VD86 236 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 FAM53BQ14153 422 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 ZNF235Q14590 738 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 TRMT5Q32P41 509 aaKnown RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 TFDP3Q5H9I0 405 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CLLU1Q5K131 121 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 RSBN1Q5VWQ0 802 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 CST9Q5W186 159 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PAMR1Q6UXH9 720 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 TOMM20LQ6UXN7 152 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 LINC00299Q6ZSB3 139 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 FAM19A5Q7Z5A7 132 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 PRR22Q8IZ63 422 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CMTM1Q8IZ96 169 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 C8orf59Q8N0T1 100 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 ZADH2Q8N4Q0 377 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SLC30A7Q8NEW0 376 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 OR4M1Q8NGD0 313 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 OR4C13Q8NGP0 309 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 OR5K1Q8NHB7 308 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 ZFAND1Q8TCF1 268 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 EEF1AKMT1Q8WVE0 214 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CHCHD10Q8WYQ3 142 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 HIST1H2BAQ96A08 127 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PTX4Q96A99 478 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CMBLQ96DG6 245 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SLC25A38Q96DW6 304 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PIK3IP1Q96FE7 263 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 DNAJC30Q96LL9 226 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 OR52E6Q96RD3 313 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 KCTD14Q9BQ13 255 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 TAPBPLQ9BX59 468 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 RSPO3Q9BXY4 272 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 Q9H3A6 140 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 CST9LQ9H4G1 147 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PTGES2Q9H7Z7 377 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 TMEM38BQ9NVV0 291 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 OPTCQ9UBM4 332 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 PRO0628Q9UI54 55 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 ZNF230Q9UIE0 474 aaPredicted RBP2.49□□□□□ -2.01
CD44-229ENST00000528672 KLK13Q9UKR3 277 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 TP53TG1Q9Y2A0 90 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 RFNGQ9Y644 331 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 ARHGAP23Q9P227 1491 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SPATA31E1Q6ZUB1 1445 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 SMARCA4P51532 1647 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 ABCC12Q96J65 1359 aa2.49□□□□□ -2.01
CD44-229ENST00000528672 MAP3K1Q13233 1512 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 KDM5DQ9BY66 1539 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 IGSF9BQ9UPX0 1349 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 NAV1Q8NEY1 1877 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 CCDC141Q6ZP82 1450 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 NLRP1Q9C000 1473 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 MBD5Q9P267 1494 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 A0A1B0GW55 424 aa2.48□□□□□ -2.01
CD44-229ENST00000528672 ANKRD20A5PA0PJZ0 165 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms