RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TREM2Q9NZC2 230 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 DUSP13Q9UII6 198 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ESPL1Q14674 2120 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 KIR2DS1A0A191URI9 304 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 RFPL4AA6NLU0 287 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 RFPL4AL1F8VTS6 287 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 SNAPC5O75971 98 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 CD40P25942 277 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 SSTR2P30874 369 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 KIR2DS4P43632 304 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 GMFBP60983 142 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 SORDQ00796 357 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 LY6DQ14210 128 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 KIR2DS1Q14954 304 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 HERPUD1Q15011 391 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 COQ8AQ8NI60 647 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 SEC22AQ96IW7 307 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 VKORC1Q9BQB6 163 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 PRR13Q9NZ81 148 aa17.5■□□□□ 0.39
VPS28-209ENST00000528142 TPRP12270 2363 aaKnown RBP17.5■□□□□ 0.39
VPS28-209ENST00000528142 IGLV3-9A0A075B6K5 115 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 CRYM-AS1A6NIL9 109 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 POM121CA8CG34 1229 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 SIRPB1O00241 398 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 SH2D1BO14796 132 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 AADACP22760 399 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 SEC61A1P61619 476 aaKnown RBP17.49■□□□□ 0.39
VPS28-209ENST00000528142 MZT1Q08AG7 82 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 KLRB1Q12918 225 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 PAN3Q58A45 887 aaKnown RBP17.49■□□□□ 0.39
VPS28-209ENST00000528142 TOMM40LQ969M1 308 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 TMEM165Q9HC07 324 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 IGKV1-6A0A0C4DH72 117 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 WNT9BO14905 357 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 TSC22D2O75157 780 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 PTBP3O95758 552 aaKnown RBP17.49■□□□□ 0.39
VPS28-209ENST00000528142 MDH2P40926 338 aaKnown RBP17.49■□□□□ 0.39
VPS28-209ENST00000528142 CD200P41217 278 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 FXYD4P59646 89 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 GAPTQ8N292 157 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 RND1Q92730 232 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 PIK3IP1Q96FE7 263 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 ELMOD3Q96FG2 381 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 PDCD10Q9BUL8 212 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 RAB18Q9NP72 206 aa17.49■□□□□ 0.39
VPS28-209ENST00000528142 ZSCAN5BA6NJL1 495 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 A6NLC8 198 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 PPYP01298 95 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 SERPINF1P36955 418 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 KLF3P57682 345 aaPredicted RBP17.48■□□□□ 0.39
VPS28-209ENST00000528142 ACP7Q6ZNF0 438 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 ZGRF1Q86YA3 2104 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 OR2Z1Q8NG97 314 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 PLPPR1Q8TBJ4 325 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 UFSP2Q9NUQ7 469 aa17.48■□□□□ 0.39
VPS28-209ENST00000528142 HAND1O96004 215 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 IFNA2P01563 188 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 CTXN2P0C2S0 81 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 LMO1P25800 156 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 PIGPP57054 158 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 RPS23P62266 143 aaKnown RBP17.47■□□□□ 0.39
VPS28-209ENST00000528142 FGL1Q08830 312 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 VHLLQ6RSH7 139 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 FIP1L1Q6UN15 594 aaKnown RBP17.47■□□□□ 0.39
VPS28-209ENST00000528142 ZNF497Q6ZNH5 498 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 SGPP2Q8IWX5 399 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 SLC38A6Q8IZM9 456 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 SYT3Q9BQG1 590 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 RSRP1Q9BUV0 290 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 FXYD6-FXYD2A0A087WZ82 144 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 FAM25EA8MYX2 175 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 TUSC2O75896 110 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 TK1P04183 234 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 THBDP07204 575 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 RCC1P18754 421 aaPredicted RBP17.47■□□□□ 0.39
VPS28-209ENST00000528142 HOXA4Q00056 320 aaPredicted RBP17.47■□□□□ 0.39
VPS28-209ENST00000528142 MEMO1Q9Y316 297 aa17.47■□□□□ 0.39
VPS28-209ENST00000528142 L7N2F9 121 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 ARPC5O15511 151 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 ADAP1O75689 374 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 MPC2O95563 127 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 HERV-K104P61576 105 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 NDUFA5Q16718 116 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 GSG1LQ6UXU4 331 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 NUP37Q8NFH4 326 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 PPP1R1CQ8WVI7 109 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 C1orf123Q9NWV4 160 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 RASL12Q9NYN1 266 aa17.46■□□□□ 0.39
VPS28-209ENST00000528142 TEX13DA0A0J9YY54 714 aaPredicted RBP17.45■□□□□ 0.38
VPS28-209ENST00000528142 C13orf42A0A1B0GVH6 325 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 C5orf51A6NDU8 294 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 H7C1Q1 480 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 BET1O15155 118 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 KCNJ3P48549 501 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 CEBPDP49716 269 aaPredicted RBP17.45■□□□□ 0.38
VPS28-209ENST00000528142 HLA-DRB3P79483 266 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 OPCMLQ14982 345 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 TMEM65Q6PI78 240 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 TMEM108Q6UXF1 575 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 ZNF767PQ75MW2 155 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms