RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TRIM16LQ309B1 348 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SNAI3Q3KNW1 292 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SLC36A2Q495M3 483 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 PDLIM3Q53GG5 364 aaPredicted RBP3.56□□□□□ -1.84
CD44-226ENST00000527889 TMEM41BQ5BJD5 291 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 DMRTC1Q5HYR2 192 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 DDI2Q5TDH0 399 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 GPR157Q5UAW9 335 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 TMEM244Q5VVB8 128 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 FBXW9Q5XUX1 488 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 GFRALQ6UXV0 394 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 LRRTM1Q86UE6 522 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 CCDC190Q86UF4 302 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 MDP1Q86V88 176 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SNX29P2Q8IUI4 249 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 LINC00518Q8N0U6 118 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SAMD12Q8N8I0 201 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 CSNK2A3Q8NEV1 391 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 OR51A2Q8NGJ7 313 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 OR1K1Q8NGR3 316 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 OR6K3Q8NGY3 331 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 OR2AE1Q8NHA4 323 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 FAM57AQ8TBR7 257 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 LGALS14Q8TCE9 139 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 GPX8Q8TED1 209 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 GLYATL2Q8WU03 294 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 ASB5Q8WWX0 329 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 S100ZQ8WXG8 99 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 PHYHIPQ92561 330 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SPTSSAQ969W0 71 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 FGGYQ96C11 551 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SNRNP40Q96DI7 357 aaKnown RBP3.56□□□□□ -1.84
CD44-226ENST00000527889 STARD4Q96DR4 205 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 ADAT3Q96EY9 351 aaPredicted RBP3.56□□□□□ -1.84
CD44-226ENST00000527889 ZC3HAV1LQ96H79 300 aaKnown RBP3.56□□□□□ -1.84
CD44-226ENST00000527889 DIRAS2Q96HU8 199 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 LYZL4Q96KX0 146 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SPACA5Q96QH8 159 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 FAM110AQ9BQ89 295 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 MLST8Q9BVC4 326 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 PARD6GQ9BYG4 376 aaPredicted RBP3.56□□□□□ -1.84
CD44-226ENST00000527889 KRTAP9-3Q9BYQ3 159 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 KRTAP4-9Q9BYQ8 210 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SLITRK2Q9H156 845 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 KCNK15Q9H427 330 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 NIPAL2Q9H841 368 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 PLGRKTQ9HBL7 147 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 HMG20AQ9NP66 347 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 SLC17A5Q9NRA2 495 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 TUBG2Q9NRH3 451 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 HIF1ANQ9NWT6 349 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 B3GNT2Q9NY97 397 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 TAS2R4Q9NYW5 299 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 UBQLN2Q9UHD9 624 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 NUFIP1Q9UHK0 495 aaKnown RBP3.56□□□□□ -1.84
CD44-226ENST00000527889 TINAGQ9UJW2 476 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 PROCRQ9UNN8 238 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 FLVCR2Q9UPI3 526 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 TIMM10BQ9Y5J6 103 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 TNCP24821 2201 aa3.56□□□□□ -1.84
CD44-226ENST00000527889 NIPBLQ6KC79 2804 aaeCLIP3.56□□□□□ -1.84
CD44-226ENST00000527889 FLNAP21333 2647 aaKnown RBP3.55□□□□□ -1.84
CD44-226ENST00000527889 PLSCR5A0PG75 271 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 CIB4A0PJX0 185 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 C5orf49A4QMS7 147 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 FAM25AB3EWG3 89 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 FAM25CB3EWG5 89 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 FAM25GB3EWG6 89 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 PDCD5O14737 125 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 ISG15P05161 165 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 CD2P06729 351 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 EIF4EP06730 217 aaKnown RBP3.55□□□□□ -1.84
CD44-226ENST00000527889 COX5BP10606 129 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 GABRA1P14867 456 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 ZNF20P17024 532 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 IGFBP3P17936 291 aaPredicted RBP3.55□□□□□ -1.84
CD44-226ENST00000527889 ELK1P19419 428 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 COX5AP20674 150 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 CCL1P22362 96 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 PSMB6P28072 239 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 RAB11AP62491 216 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 PPP3R1P63098 170 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 SORDQ00796 357 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 IFITM3Q01628 133 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 PLP2Q04941 152 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 KLRB1Q12918 225 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 ECH1Q13011 328 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 PLA2G7Q13093 441 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 RAB11BQ15907 218 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 ZNF79Q15937 498 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 CARTPTQ16568 116 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 PNLIPRP3Q17RR3 467 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 KRTAP27-1Q3LI81 207 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 ESCO2Q56NI9 601 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 GLYATL3Q5SZD4 288 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 OR2A2Q6IF42 318 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 CNIH2Q6PI25 160 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 DRAM2Q6UX65 266 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 ZNF627Q7L945 461 aa3.55□□□□□ -1.84
CD44-226ENST00000527889 MYPOPQ86VE0 399 aaPredicted RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms