RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 HIST1H2BKO60814 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 EEDO75530 441 aaKnown RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 SLC25A12O75746 678 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TNFSF13O75888 250 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 RAB36O95755 333 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 ACTL6AO96019 429 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 ALDOAP04075 364 aaKnown RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 LCATP04180 440 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BJP06899 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SOD3P08294 240 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 OR8U9P0C7N5 309 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SMIM17P0DL12 118 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 OR13C7P0DN81 318 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SLC25A4P12235 298 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TPT1P13693 172 aaKnown RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 ETFAP13804 333 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SELEP16581 610 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TNFRSF1BP20333 461 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 GPX3P22352 226 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BOP23527 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 CXCR1P25024 350 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 F2RP25116 425 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 IMPA1P29218 277 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 FGF9P31371 208 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BBP33778 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SSTR5P35346 364 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 CEACAM3P40198 252 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 CRYBB2P43320 205 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 RPS10P46783 165 aaKnown RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 SULT1A1P50225 295 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 RAB9AP51151 201 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 DVL1P1P54792 670 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BDP58876 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 CKS1BP61024 79 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BCP62807 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HERV-K104P63124 156 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 EFNB1P98172 346 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 FAM3AP98173 230 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 BDH1Q02338 343 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 BAXQ07812 192 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 AESQ08117 197 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 RBM39Q14498 530 aaKnown RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 SSX1Q16384 188 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TAZQ16635 292 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST2H2BEQ16778 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 ODF4Q2M2E3 257 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 ZNF658BQ4V348 819 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 ARL13AQ5H913 290 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 TFDP3Q5H9I0 405 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 PHYHD1Q5SRE7 291 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 LDLRAD2Q5SZI1 272 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 ZNF474Q6S9Z5 364 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 TMEM205Q6UW68 189 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 IGFL3Q6UXB1 125 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 GLDNQ6ZMI3 551 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 ZNF705AQ6ZN79 300 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 ACOT7LQ6ZUV0 252 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 CUZD1Q86UP6 607 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 LINC00346Q8IVM7 164 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TOMM5Q8N4H5 51 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 GATSQ8NAP1 163 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 RELL2Q8NC24 303 aaPredicted RBP4.69□□□□□ -1.66
NUP54-218ENST00000515460 OR5AP2Q8NGF4 316 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 C15orf40Q8WUR7 153 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 APH1BQ8WW43 257 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TMEM158Q8WZ71 300 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BHQ93079 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TMEM18Q96B42 140 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HARBI1Q96MB7 349 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 PANX1Q96RD7 426 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BNQ99877 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HIST1H2BMQ99879 126 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 PIMREGQ9BSJ6 248 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 FXYD6Q9H0Q3 95 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 PLK3Q9H4B4 646 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SMDT1Q9H4I9 107 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 ACTR8Q9H981 624 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 FN3KRPQ9HA64 309 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 NMRAL1Q9HBL8 299 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HHATLQ9HCP6 504 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 FAM60AQ9NP50 221 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SLC17A5Q9NRA2 495 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 SLC2A8Q9NY64 477 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 OR5AC2Q9NZP5 309 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 FOXJ3Q9UPW0 622 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 AMDHD2Q9Y303 409 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 MEMO1Q9Y316 297 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 HDGFL3Q9Y3E1 203 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 OR10H1Q9Y4A9 318 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 VWFP04275 2813 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TENM1Q9UKZ4 2725 aa4.69□□□□□ -1.66
NUP54-218ENST00000515460 TNRC6AQ8NDV7 1962 aaKnown RBP4.68□□□□□ -1.66
NUP54-218ENST00000515460 ZANQ9Y493 2812 aa4.68□□□□□ -1.66
NUP54-218ENST00000515460 GXYLT2A0PJZ3 443 aa4.68□□□□□ -1.66
NUP54-218ENST00000515460 IRGMA1A4Y4 181 aa4.68□□□□□ -1.66
NUP54-218ENST00000515460 ELOVL7A1L3X0 281 aa4.68□□□□□ -1.66
NUP54-218ENST00000515460 TMEM213A2RRL7 107 aa4.68□□□□□ -1.66
NUP54-218ENST00000515460 ANKUB1A6NFN9 424 aa4.68□□□□□ -1.66
NUP54-218ENST00000515460 VSTM2BA6NLU5 285 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms