RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TIMP1P01033 207 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 IL2RAP01589 272 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 VAX1Q5SQQ9 334 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF660Q6AZW8 331 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 OR11H1Q8NG94 326 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 OR11H2Q8NH07 326 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MRGPRX3Q96LB0 322 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 PAAF1Q9BRP4 392 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF665Q9H7R5 613 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 C20orf141Q9NUB4 165 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 CARHSP1Q9Y2V2 147 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 FER1L4A9Z1Z3 1794 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 FGF17O60258 216 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF865P0CJ78 1059 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 GZMHP20718 246 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 IRF3Q14653 427 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MICBQ29980 383 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF750Q32MQ0 723 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MRPL52Q86TS9 123 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 LDLRAD3Q86YD5 345 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 TGIF2LYQ8IUE0 185 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 BAHD1Q8TBE0 780 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 LINC00615Q96LM1 132 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 LTB4R2Q9NPC1 389 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 C1RLQ9NZP8 487 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 AUP1Q9Y679 476 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MICAL3Q7RTP6 2002 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 DPRXA6NFQ7 191 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 SLC25A17O43808 307 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 HOXD4P09016 255 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 CD1BP29016 333 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 IBA57Q5T440 356 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 BEND2Q8NDZ0 799 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 AQP10Q96PS8 301 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MRPS18AQ9NVS2 196 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MOB4Q9Y3A3 225 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 TRBV5-4A0A0C4DH59 114 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 SPRY1O43609 319 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 PRKRAO75569 313 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 LYZL6O75951 148 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 NKX2-2O95096 273 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 LYZP61626 148 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 ZXDAP98168 799 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 SKP2Q13309 424 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 OR5R1Q8NH85 324 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 OR13C6PQ8NH95 151 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 OR2V1Q8NHB1 315 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 C16orf52Q8NHV5 167 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 ZBP1Q9H171 429 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 NPVFQ9HCQ7 196 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 MED29Q9NX70 200 aa9.94□□□□□ -0.82
LIMCH1-217ENST00000512946 FAM90A26D6RGX4 464 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 PPYP01298 95 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 LINC00614P0C842 121 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 ORM2P19652 201 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 HOXA4Q00056 320 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 CD300CQ08708 224 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 SPANXN1Q5VSR9 72 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 TSPAN32Q96QS1 320 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 SPCS1Q9Y6A9 102 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 AGAP20933 346 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 OR10D3Q8NH80 312 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 K7ESF4 209 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF735P0CB33 412 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 CTAG1AP78358 180 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 OR1N1Q8NGS0 311 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 TMEM208Q9BTX3 173 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 GPR27Q9NS67 375 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 ATP23Q9Y6H3 246 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 CTSVO60911 334 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 PPP1R17O96001 155 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 TRGC1P0CF51 173 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 PPP1CCP36873 323 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 ATP5IP56385 69 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 LYG1Q8N1E2 194 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 PCGF1Q9BSM1 259 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 CNTD2Q9H8S5 307 aa9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 MBD1Q9UIS9 605 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-217ENST00000512946 CFDP00746 253 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 CKS2P33552 79 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 DSCR4P56555 118 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 ANKRD37Q7Z713 158 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 OR1B1Q8NGR6 318 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 PPP1R3EQ9H7J1 279 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 TMEM140Q9NV12 185 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 MED1Q15648 1581 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 TMEM189A5PLL7 270 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 ERVH48-1M5A8F1 160 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 RCC1P18754 421 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 KHDC1LQ5JSQ8 128 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 HOGA1Q86XE5 327 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 TMEFF1Q8IYR6 380 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 SFXN3Q9BWM7 321 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 TPSD1Q9BZJ3 242 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 A0A1W2PQM1 296 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 ICOSLGO75144 302 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 CXCL12P48061 93 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 NHLRC3Q5JS37 347 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 Q5PR19 223 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms