RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KIF1BO60333 1816 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 IGHV3-72A0A0B4J1Y9 119 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 SMIM23A6NLE4 172 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 F5H5T6 163 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 SLC16A4O15374 487 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 COX7A2P2O60397 106 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 PDCD6O75340 191 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF823P16415 610 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 CELP19835 753 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ME2P23368 584 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 UBE2NLQ5JXB2 153 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 TSPO2Q5TGU0 170 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 TTC33Q6PID6 262 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-212ENST00000493341 NTM-AS1Q6ZSK4 140 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 RNF175Q8N4F7 328 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ERMNQ8TAM6 284 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF420Q8TAQ5 688 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ORAOV1Q8WV07 137 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 MBOAT7Q96N66 472 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ARL6Q9H0F7 186 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 PSTPIP2Q9H939 334 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF331Q9NQX6 463 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-212ENST00000493341 CA10Q9NS85 328 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 RBM12B-AS1Q9P1G2 102 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 C3orf18Q9UK00 162 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF223Q9UK11 482 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF780BQ9Y6R6 833 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 ZFYVE9O95405 1425 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 TRPM2O94759 1503 aa3.11□□□□□ -1.91
VPS13A-212ENST00000493341 A0A096LNJ9 63 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 PANO1I0J062 215 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 M0QZ92 97 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 FFAR1O14842 300 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 SETD1AO15047 1707 aaKnown RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ADORA1P30542 326 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ACTR1BP42025 376 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 LOXL1Q08397 574 aaPredicted RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 MLLT11Q13015 90 aaPredicted RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 C4orf26Q17RF5 130 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 RGS21Q2M5E4 152 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 GOLGA7BQ2TAP0 167 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 HLA-DRB5Q30154 266 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 Q499Y3 187 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 RNASE13Q5GAN3 156 aaKnown RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 TEX30Q5JUR7 227 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 GALNT10Q86SR1 603 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 PDPNQ86YL7 162 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 STOML3Q8TAV4 291 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 SMIM12Q96EX1 92 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ZIM3Q96PE6 472 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ANAPC13Q9BS18 74 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 TMEM208Q9BTX3 173 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 OR51E2Q9H255 320 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 FAM206AQ9NX38 181 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 TAS2R5Q9NYW4 299 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ZNRD1Q9P1U0 126 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 IFT172Q9UG01 1749 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 NRXN3Q9Y4C0 1643 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 NKTRP30414 1462 aaKnown RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 LRRC7Q96NW7 1537 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 TMEM2Q9UHN6 1383 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 XRN1Q8IZH2 1706 aaKnown RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 SETBP1Q9Y6X0 1596 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 LRP4O75096 1905 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 HFM1A2PYH4 1435 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 NAIPQ13075 1403 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 PPLO60437 1756 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 TINCRA0A1B0GVN0 87 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 CENPBD1B2RD01 187 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 LRRN3E7EW58 273 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 UPK1AO00322 258 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 SOX14O95416 240 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 IGLV3-25P01717 112 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 HLA-DQA1P01909 254 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 CD74P04233 296 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 PRTN3P24158 256 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 CDKN2CP42773 168 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 CKAP4Q07065 602 aaKnown RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 DEFB116Q30KQ4 102 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 OGFRL1Q5TC84 451 aaPredicted RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 SPINK14Q6IE38 97 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 LINC00596Q86U02 117 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ITPRIPQ8IWB1 547 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF433Q8N7K0 673 aaPredicted RBP3.1□□□□□ -1.91
VPS13A-212ENST00000493341 FXYD5Q96DB9 178 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 CHMP6Q96FZ7 201 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ZNF649Q9BS31 505 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 LRRC19Q9H756 370 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 PLEKHF2Q9H8W4 249 aa3.1□□□□□ -1.91
VPS13A-212ENST00000493341 ARHGAP21Q5T5U3 1957 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 CLTCL1P53675 1640 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 TRAV8-3A0A0A6YYJ7 113 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 IGHV7-4-1A0A0J9YVY3 117 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 TMEM223A0PJW6 202 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 PGPA6NDG6 321 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 METTL15A6NJ78 407 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 FAM183AA6NL82 134 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 PLIN3O60664 434 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 IFNA5P01569 189 aa3.09□□□□□ -1.91
VPS13A-212ENST00000493341 NQO1P15559 274 aaKnown RBP3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms