RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMEM114B3SHH9 223 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 GOLGA6L19H0YKK7 550 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ZNF701M0R085 212 aaPredicted RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 ISLRO14498 428 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CASC3O15234 703 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 TOX3O15405 576 aaPredicted RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 GATCO43716 136 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 STX10O60499 249 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 TRAPPC6AO75865 159 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CDK14O94921 469 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CRYZL1O95825 349 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 OTCP00480 354 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CSTAP01040 98 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 IFNA14P01570 189 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 APOEP02649 317 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 HMGN1P05114 100 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CDK1P06493 297 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 RHOCP08134 193 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ARL14EPLP0DKL9 152 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 RALBP11234 206 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SRMP19623 302 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 M6PRP20645 277 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SYT1P21579 422 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CRABP2P29373 138 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SLC6A1P30531 599 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ALDH3A1P30838 453 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 RCVRNP35243 200 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CCT6AP40227 531 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 CSKP41240 450 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ACTR1BP42025 376 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 GPR4P46093 362 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 GNG10P50151 68 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 FOXA1P55317 472 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 MLF1P58340 268 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 DAOAP59103 153 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 TSPAN5P62079 268 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 RPL10AP62906 217 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 IL5RAQ01344 420 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 IFITM2Q01629 132 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 LAMTOR4Q0VGL1 99 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ITGB3BPQ13352 177 aaPredicted RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 PMS2P3Q13401 168 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CASP8Q14790 479 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ZBTB6Q15916 424 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SNCBQ16143 134 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 RGS21Q2M5E4 152 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 LINC00303Q3SY05 128 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 NKAIN1Q4KMZ8 207 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CCDC58Q4VC31 144 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 TMEM31Q5JXX7 168 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SAPCD1Q5SSQ6 148 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 MRPL2Q5T653 305 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 CLEC6AQ6EIG7 209 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SPOPLQ6IQ16 392 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 PAGE2Q7Z2X7 111 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ARHGAP18Q8N392 663 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 DNAAF3Q8N9W5 541 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 LY6G5BQ8NDX9 201 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 FBXO36Q8NEA4 188 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 OR5T3Q8NGG3 340 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 OR51A7Q8NH64 312 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 OR10J5Q8NHC4 309 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ANGPTL6Q8NI99 470 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 NDNFQ8TB73 568 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CACNG8Q8WXS5 425 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 LZICQ8WZA0 190 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 YIPF5Q969M3 257 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ZNF514Q96K75 400 aaPredicted RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 METTL26Q96S19 204 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ACBD6Q9BR61 282 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 SIKE1Q9BRV8 207 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 THTPAQ9BU02 230 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 TMED9Q9BVK6 235 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CHID1Q9BWS9 393 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 MRPL20Q9BYC9 149 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 API5Q9BZZ5 524 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 YIPF3Q9GZM5 350 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 NDEL1Q9GZM8 345 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 DRC3Q9H069 523 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ABCG5Q9H222 651 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 OR51B6Q9H340 312 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 RGCCQ9H4X1 137 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 C12orf4Q9NQ89 552 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 BATF3Q9NR55 127 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CHRAC1Q9NRG0 131 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 DDIT4Q9NX09 232 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 PEF1Q9UBV8 284 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 CD300AQ9UGN4 299 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 PRO0628Q9UI54 55 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 MCTS1Q9ULC4 181 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 PAIP2BQ9ULR5 123 aaKnown RBP0.86□□□□□ -2.27
SMC4-220ENST00000488017 GINS2Q9Y248 185 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ERGIC3Q9Y282 383 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ATP6V1DQ9Y5K8 247 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 FADS3Q9Y5Q0 445 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 PUS1Q9Y606 427 aaKnown RBP eCLIP0.86□□□□□ -2.27
SMC4-220ENST00000488017 KPTNQ9Y664 436 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 ICOSQ9Y6W8 199 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 CCDC144AA2RUR9 1427 aa0.86□□□□□ -2.27
SMC4-220ENST00000488017 WRNQ14191 1432 aaPredicted RBP eCLIP0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms