RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 H3BUI4 141 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 SLC17A2O00624 439 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 GEMIN2O14893 280 aaKnown RBP12.98□□□□□ -0.33
UPF3A-208ENST00000484246 NPFFO15130 113 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 OR7C1O76099 320 aaPredicted RBP12.98□□□□□ -0.33
UPF3A-208ENST00000484246 CALRP27797 417 aaKnown RBP12.98□□□□□ -0.33
UPF3A-208ENST00000484246 RANBP1P43487 201 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 DEFB112Q30KQ8 113 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 MIDNQ504T8 468 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 LDLRAD3Q86YD5 345 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 TMEM86BQ8N661 226 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 Q96M66 194 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 NR1H4Q96RI1 486 aaPredicted RBP12.98□□□□□ -0.33
UPF3A-208ENST00000484246 GFI1Q99684 422 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 DPCDQ9BVM2 203 aaPredicted RBP12.98□□□□□ -0.33
UPF3A-208ENST00000484246 ZNF696Q9H7X3 374 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 HEXA-AS1Q9H8Q6 139 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 OR6C3Q9NZP0 311 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 DOCK11Q5JSL3 2073 aa12.98□□□□□ -0.33
UPF3A-208ENST00000484246 TRGV10A0A0A0MS01 117 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 TRIM64CA6NLI5 447 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 CLPXO76031 633 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 BPNT1O95861 308 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 GLAP06280 429 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 IGHV1-8P0DP01 117 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 MGMTP16455 207 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 HTR2CP28335 458 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 FGF9P31371 208 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-208ENST00000484246 GLIPR1P48060 266 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 PSMD7P51665 324 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 UBA52P62987 128 aaKnown RBP12.97□□□□□ -0.33
UPF3A-208ENST00000484246 QRFPP83859 136 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 SCN1BQ07699 218 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 AESQ08117 197 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 KLRD1Q13241 179 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 ATXN7L3Q14CW9 347 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-208ENST00000484246 KRBOX4Q5JUW0 171 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 RSBN1Q5VWQ0 802 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-208ENST00000484246 TPRX1Q8N7U7 411 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 SUMF2Q8NBJ7 301 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 TMEM104Q8NE00 496 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 FAM216AQ8WUB2 273 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 SLC25A28Q96A46 364 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 MDFIQ99750 246 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 GAL3ST2Q9H3Q3 398 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 LINC00574Q9H8X3 128 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 ZNF581Q9P0T4 197 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 FBLN5Q9UBX5 448 aa12.97□□□□□ -0.33
UPF3A-208ENST00000484246 SOX21Q9Y651 276 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-208ENST00000484246 A0A0U1RQK1 487 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 DNAJC9-AS1A6NH13 148 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 TMEM14DPA8MWL7 114 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 TRIM77I1YAP6 450 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 CGB3P0DN86 165 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 CGB7P0DN87 165 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 VSIG8P0DPA2 414 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 SAA4P35542 130 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 DLX1P56177 255 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 TAF9Q16594 264 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 HEPN1Q6WQI6 88 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 Q6YL49 198 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 OR2W3Q7Z3T1 314 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 GAPTQ8N292 157 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 OR11H6Q8NGC7 330 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 TM2D1Q9BX74 207 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 BARHL1Q9BZE3 327 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 STUB1Q9UNE7 303 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 SESN1Q9Y6P5 492 aa12.96□□□□□ -0.33
UPF3A-208ENST00000484246 A0A087WXM4 84 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 MDFIC2A0A1B0GVS7 189 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 ZNF729A6NN14 1252 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-208ENST00000484246 RNF212BA8MTL3 300 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 ODF3BA8MYP8 253 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 CRTAPO75718 401 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-208ENST00000484246 RNASE1P07998 156 aaKnown RBP12.95□□□□□ -0.34
UPF3A-208ENST00000484246 FBP1P09467 338 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 MYL9P24844 172 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 CD34P28906 385 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 ZNF626Q68DY1 528 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 SLC35E4Q6ICL7 350 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 OR13D1Q8NGV5 346 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 KCNG3Q8TAE7 436 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 PLPPR1Q8TBJ4 325 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 SELENOIQ9C0D9 397 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 AK6Q9Y3D8 172 aaKnown RBP12.95□□□□□ -0.34
UPF3A-208ENST00000484246 POMT1Q9Y6A1 747 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 V9GY05 133 aa12.95□□□□□ -0.34
UPF3A-208ENST00000484246 FBN1P35555 2871 aaKnown RBP12.95□□□□□ -0.34
UPF3A-208ENST00000484246 A0A087X0M5 115 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 A0A1B0GX30 115 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 SHISA3A0PJX4 238 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 TMEM30CPA0ZSE6 113 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 HSPB6O14558 160 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 PDCD5O14737 125 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 CA11O75493 328 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 MELTFP08582 738 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 RPS27AP62979 156 aaKnown RBP12.94□□□□□ -0.34
UPF3A-208ENST00000484246 SRSF2Q01130 221 aaKnown RBP12.94□□□□□ -0.34
UPF3A-208ENST00000484246 PRB3Q04118 309 aaPredicted RBP12.94□□□□□ -0.34
UPF3A-208ENST00000484246 BAMBIQ13145 260 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms