RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 LYPD2Q6UXB3 125 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 ZNF497Q6ZNH5 498 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 Q6ZS49 121 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 ZNF561Q8N587 486 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 FAM216BQ8N7L0 139 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 DEFB108BQ8NET1 73 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 SETD6Q8TBK2 473 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 NRGNQ92686 78 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 SNX22Q96L94 193 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 CCL19Q99731 98 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 CMSS1Q9BQ75 279 aaKnown RBP6.87□□□□□ -1.31
USP4-210ENST00000483212 TMEM246Q9BRR3 403 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 DNTTIP1Q9H147 329 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 PPA2Q9H2U2 334 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 C12orf4Q9NQ89 552 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 KAAG1Q9UBP8 84 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 CTSZQ9UBR2 303 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 GLS2Q9UI32 602 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 ZNF107Q9UII5 783 aaPredicted RBP6.87□□□□□ -1.31
USP4-210ENST00000483212 CRYBG3Q68DQ2 2970 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 POM121CA8CG34 1229 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 SSX4O60224 188 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 MT-ND4P03905 459 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 TK1P04183 234 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 CSF1P09603 554 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 MDH2P40926 338 aaKnown RBP6.86□□□□□ -1.31
USP4-210ENST00000483212 CBX5P45973 191 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 RFX2P48378 723 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 KCNJ3P48549 501 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 ACTBP60709 375 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 ACTG1P63261 375 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 DYRK1AQ13627 763 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 RBM39Q14498 530 aaKnown RBP6.86□□□□□ -1.31
USP4-210ENST00000483212 ATXN7L3Q14CW9 347 aaPredicted RBP6.86□□□□□ -1.31
USP4-210ENST00000483212 SRSF7Q16629 238 aaKnown RBP eCLIP6.86□□□□□ -1.31
USP4-210ENST00000483212 SLC35E4Q6ICL7 350 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 OR52W1Q6IF63 320 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 FGFRL1Q8N441 504 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 TOMM5Q8N4H5 51 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 TMEM229BQ8NBD8 167 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 ZNRF1Q8ND25 227 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 DEDD2Q8WXF8 326 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 MAFIPQ8WZ33 124 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 CCL13Q99616 98 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 CHST6Q9GZX3 395 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 C11orf54Q9H0W9 315 aaPredicted RBP6.86□□□□□ -1.31
USP4-210ENST00000483212 FAM234AQ9H0X4 552 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 ZNF665Q9H7R5 613 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 CHODLQ9H9P2 273 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 HRASLSQ9HDD0 168 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 Q9N2K0 584 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 MBNL3Q9NUK0 354 aaKnown RBP6.86□□□□□ -1.31
USP4-210ENST00000483212 ETAA1Q9NY74 926 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 TAS2R8Q9NYW2 309 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 ZNF230Q9UIE0 474 aaPredicted RBP6.86□□□□□ -1.31
USP4-210ENST00000483212 TACC2O95359 2948 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 CELSR2Q9HCU4 2923 aa6.86□□□□□ -1.31
USP4-210ENST00000483212 DSCAMO60469 2012 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 MGST3O14880 152 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 LYRM1O43325 122 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 ECDO95905 644 aaPredicted RBP6.85□□□□□ -1.31
USP4-210ENST00000483212 CD3DP04234 171 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 FCER2P06734 321 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 ZNF735P0CB33 412 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 GSTT2BP0CG30 244 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 GABRA2P47869 451 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 TMEM33P57088 247 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 TAS2R19P59542 299 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 AESQ08117 197 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 OXA1LQ15070 435 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 GRK1Q15835 563 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 TMEM155Q4W5P6 130 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 AVPI1Q5T686 147 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 ZNF57Q68EA5 555 aaPredicted RBP6.85□□□□□ -1.31
USP4-210ENST00000483212 STEAP1BQ6NZ63 245 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 ZNF841Q6ZN19 808 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 GDPD3Q7L5L3 318 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 TCF23Q7RTU1 214 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 C5orf24Q7Z6I8 188 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 ZNF525Q8N782 197 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 ASCC1Q8N9N2 400 aaKnown RBP6.85□□□□□ -1.31
USP4-210ENST00000483212 BEST4Q8NFU0 473 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 OR4D10Q8NGI6 311 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 OR4C16Q8NGL9 310 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 OR4K15Q8NH41 348 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 GSX2Q9BZM3 304 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 TINAGL1Q9GZM7 467 aaPredicted RBP6.85□□□□□ -1.31
USP4-210ENST00000483212 RIMS4Q9H426 269 aaPredicted RBP6.85□□□□□ -1.31
USP4-210ENST00000483212 NCOR1P1Q9H4R4 102 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 MYOZ1Q9NP98 299 aaPredicted RBP6.85□□□□□ -1.31
USP4-210ENST00000483212 ANXA10Q9UJ72 324 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 EDARQ9UNE0 448 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 CENPEQ02224 2701 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 PTPN13Q12923 2485 aa6.85□□□□□ -1.31
USP4-210ENST00000483212 NBPF19A0A087WUL8 3843 aa6.84□□□□□ -1.31
USP4-210ENST00000483212 DOPEY2Q9Y3R5 2298 aa6.84□□□□□ -1.31
USP4-210ENST00000483212 TRAV39A0A0B4J263 110 aa6.84□□□□□ -1.31
USP4-210ENST00000483212 IGKV1-6A0A0C4DH72 117 aa6.84□□□□□ -1.31
USP4-210ENST00000483212 LINC00854A0A1B0GVQ3 168 aa6.84□□□□□ -1.31
USP4-210ENST00000483212 TMEM30CPA0ZSE6 113 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms