RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF615Q8N8J6 731 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 ZFP62Q8NB50 900 aaPredicted RBP2.96□□□□□ -1.94
UPF3B-203ENST00000478840 SCGB1C1Q8TD33 95 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 DTD1Q8TEA8 209 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 DNAJB3Q8WWF6 145 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 YIPF5Q969M3 257 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 PRSS27Q9BQR3 290 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 EBPLQ9BY08 206 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF436Q9C0F3 470 aaPredicted RBP2.96□□□□□ -1.94
UPF3B-203ENST00000478840 METTL17Q9H7H0 456 aaPredicted RBP2.96□□□□□ -1.94
UPF3B-203ENST00000478840 CYTL1Q9NRR1 136 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF835Q9Y2P0 537 aa2.96□□□□□ -1.94
UPF3B-203ENST00000478840 RPRD2Q5VT52 1461 aaKnown RBP2.96□□□□□ -1.94
UPF3B-203ENST00000478840 TICRRQ7Z2Z1 1910 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 PLXNB3Q9ULL4 1909 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 A0A0A6YYH2 397 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 A6NJ64 397 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 C16orf90A8MZG2 172 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 MFNGO00587 321 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 LIN7AO14910 233 aaPredicted RBP2.95□□□□□ -1.94
UPF3B-203ENST00000478840 ADAP1O75689 374 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 CDRT1O95170 752 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 HLA-AP01891 365 aaKnown RBP2.95□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF286BP0CG31 522 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 ATF1P18846 271 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 PVALBP20472 110 aaPredicted RBP2.95□□□□□ -1.94
UPF3B-203ENST00000478840 PYCR1P32322 319 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 MED21Q13503 144 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 TTMPQ5BVD1 217 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 TBPL2Q6SJ96 375 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 PLCZ1Q86YW0 608 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 GATD1Q8NB37 220 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 DDI1Q8WTU0 396 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 TWIST2Q8WVJ9 160 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 DEDD2Q8WXF8 326 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 FXYD5Q96DB9 178 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 ANAPC13Q9BS18 74 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 DCUN1D5Q9BTE7 237 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 SLC19A3Q9BZV2 496 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 NKIRAS1Q9NYS0 192 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 TBL2Q9Y4P3 447 aaKnown RBP2.95□□□□□ -1.94
UPF3B-203ENST00000478840 SLC22A7Q9Y694 548 aa2.95□□□□□ -1.94
UPF3B-203ENST00000478840 POLR3AO14802 1390 aaPredicted RBP2.95□□□□□ -1.94
UPF3B-203ENST00000478840 IGHV3-43A0A0B4J1X8 118 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF98A6NK75 572 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 HIST1H1CP16403 213 aaKnown RBP2.94□□□□□ -1.94
UPF3B-203ENST00000478840 CBX5P45973 191 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF235Q14590 738 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 TMEM241Q24JQ0 296 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 LRRC26Q2I0M4 334 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 NXNL2Q5VZ03 156 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 DRAM2Q6UX65 266 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 FAM151BQ6UXP7 276 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 MTERF4Q7Z6M4 381 aaKnown RBP2.94□□□□□ -1.94
UPF3B-203ENST00000478840 HMGN2P46Q86SG4 172 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 MARCH3Q86UD3 253 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 OR52E4Q8NGH9 312 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 OR4P4Q8NGL7 312 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 OR2K2Q8NGT1 345 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 GPR22Q99680 433 aa2.94□□□□□ -1.94
UPF3B-203ENST00000478840 TRIP11Q15643 1979 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 IGLL5B9A064 214 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 RGS5O15539 181 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 NIPSNAP2O75323 286 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 RBBP9O75884 186 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 KCNK2O95069 426 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 FSTL3O95633 263 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 PRB2P02812 416 aaPredicted RBP2.93□□□□□ -1.94
UPF3B-203ENST00000478840 PTHLHP12272 177 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 GTF2F2P13984 249 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 PMELP40967 661 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF83P51522 516 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 MGAT3Q09327 533 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 PAFAH1B3Q15102 231 aaKnown RBP2.93□□□□□ -1.94
UPF3B-203ENST00000478840 TBC1D28Q2M2D7 210 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 KPRPQ5T749 579 aaPredicted RBP2.93□□□□□ -1.94
UPF3B-203ENST00000478840 CASP12Q6UXS9 341 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 DPPA2Q7Z7J5 298 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 DAZ4Q86SG3 579 aaKnown RBP2.93□□□□□ -1.94
UPF3B-203ENST00000478840 SLC13A5Q86YT5 568 aaPredicted RBP2.93□□□□□ -1.94
UPF3B-203ENST00000478840 BLIDQ8IZY5 108 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 STOML3Q8TAV4 291 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 CLDN23Q96B33 292 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 DAZ1Q9NQZ3 744 aaKnown RBP2.93□□□□□ -1.94
UPF3B-203ENST00000478840 INIPQ9NRY2 104 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 DMAC2Q9NW81 257 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 NAGKQ9UJ70 344 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 POMPQ9Y244 141 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 SCN4AP35499 1836 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 ARAP3Q8WWN8 1544 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 PTPRKQ15262 1439 aa2.93□□□□□ -1.94
UPF3B-203ENST00000478840 IGLV2-18A0A075B6J9 118 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 ISLRO14498 428 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 NRASP01111 189 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 HRASP01112 189 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 KRASP01116 189 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 IGLV7-43P04211 117 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 F8A1P23610 371 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 PSMD7P51665 324 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 RAB25P57735 213 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms