RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NDNFQ8TB73 568 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 DIMT1Q9UNQ2 313 aaKnown RBP11.31□□□□□ -0.6
UPF3A-204ENST00000475218 A0A087X0M5 115 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 A0A1B0GX30 115 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 H0YJX3 145 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 HSPB6O14558 160 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 DEGS1O15121 323 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 CSF1P09603 554 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 RAB3AP20336 220 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 DCKP27707 260 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 HTR1DP28221 377 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 OR3A4PP47883 348 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 RPS11P62280 158 aaKnown RBP eCLIP11.3□□□□□ -0.6
UPF3A-204ENST00000475218 KRBOX4Q5JUW0 171 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 LYG1Q8N1E2 194 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 PLPPR1Q8TBJ4 325 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 GPR148Q8TDV2 347 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 TNFAIP8L1Q8WVP5 186 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 GAL3ST2Q9H3Q3 398 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 ABCB10Q9NRK6 738 aa11.3□□□□□ -0.6
UPF3A-204ENST00000475218 GNAO1P09471 354 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 CD28P10747 220 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 Q6ZTK2 550 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 ZNF555Q8NEP9 628 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 OR13A1Q8NGR1 328 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 HAVCR2Q8TDQ0 301 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 TMEM106AQ96A25 262 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 KIRREL1Q96J84 757 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 LINC00574Q9H8X3 128 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 BABAM2Q9NXR7 383 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 DPM3Q9P2X0 92 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 KIF25Q9UIL4 384 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 PLXNB1O43157 2135 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 DNAH3Q8TD57 4116 aa11.29□□□□□ -0.6
UPF3A-204ENST00000475218 TRBV5-5A0A0J9YX44 114 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 SMIM31A0A1B0GVY4 71 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 F2RL2O00254 374 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 CDRT1O95170 752 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 AMY1AP04745 511 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 AMY2AP04746 511 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 ALDOBP05062 364 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 IGFBP3P17936 291 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-204ENST00000475218 PTGFRP43088 359 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 PAX5Q02548 391 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 RSBN1Q5VWQ0 802 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-204ENST00000475218 DMKNQ6E0U4 476 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-204ENST00000475218 RTN4RL2Q86UN3 420 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 SATL1Q86VE3 508 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 CYGBQ8WWM9 190 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 SMIM19Q96E16 107 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 PGLYRP3Q96LB9 341 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 OCSTAMPQ9BR26 566 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 PITPNC1Q9UKF7 332 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 PCDHGB5Q9Y5G0 923 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 KBTBD11-OT1A0A1B0GTJ5 212 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 FUOMA2VDF0 154 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 ZNF729A6NN14 1252 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-204ENST00000475218 BUB1B-PAK6H3BSN5 160 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 IL13RA2Q14627 380 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 HLA-DRB5Q30154 266 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 OR52W1Q6IF63 320 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 IZUMO2Q6UXV1 221 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 ZFP41Q8N8Y5 198 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 GGHQ92820 318 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 GHSRQ92847 366 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 CYYR1Q96J86 154 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 OR5M11Q96RB7 305 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 PRSS22Q9GZN4 317 aa11.28□□□□□ -0.6
UPF3A-204ENST00000475218 TRAV8-7A0A075B6U6 113 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 TRAV39A0A0B4J263 110 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 A0A1W2PP11 408 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 CASQ2O14958 399 aaPredicted RBP11.27□□□□□ -0.61
UPF3A-204ENST00000475218 OPN1MWP04001 364 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 OPN1MW2P0DN77 364 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 OPN1MW3P0DN78 364 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 PAN3Q58A45 887 aaKnown RBP11.27□□□□□ -0.61
UPF3A-204ENST00000475218 TPTE2P1Q5T6R2 138 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 TMPRSS11AQ6ZMR5 421 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 PACRGLQ8N7B6 248 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 OR52N1Q8NH53 320 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 ZNF596Q8TC21 504 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 FBLIM1Q8WUP2 373 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 LEAP2Q969E1 77 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 NCOR1P1Q9H4R4 102 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 Q9H521 79 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 TMEM138Q9NPI0 162 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 ETAA1Q9NY74 926 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 CALYQ9NYX4 217 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 IL36GQ9NZH8 169 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 OR6C3Q9NZP0 311 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 ZNF281Q9Y2X9 895 aa11.27□□□□□ -0.61
UPF3A-204ENST00000475218 NPIPB11E5RHQ5 1161 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 G3V4G9 280 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 IGHV3-7P01780 117 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 MED21Q13503 144 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 NHLRC3Q5JS37 347 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 TTC23Q5W5X9 447 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 TMEM80Q96HE8 168 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 GPER1Q99527 375 aa11.26□□□□□ -0.61
UPF3A-204ENST00000475218 CITED2Q99967 270 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms