RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR2W5A6NFC9 320 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 CTSVO60911 334 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 CA2P00918 260 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 PTGER1P34995 402 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 CIRBPQ14011 172 aaKnown RBP11.84□□□□□ -0.51
COL6A3-209ENST00000472056 HFEQ30201 348 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 SOX21Q9Y651 276 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-209ENST00000472056 HOXB1P14653 301 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-209ENST00000472056 CD82P27701 267 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 ZNF141Q15928 474 aa11.84□□□□□ -0.51
COL6A3-209ENST00000472056 F11P03951 625 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 ATP5IP56385 69 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-209ENST00000472056 EMC6Q9BV81 110 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 PKIBQ9C010 78 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 SLC25A22Q9H936 323 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 ZDHHC8Q9ULC8 765 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 ASTLQ6HA08 431 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-209ENST00000472056 VAX1Q5SQQ9 334 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 OR1N2Q8NGR9 330 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 IFITM10A6NMD0 228 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 DHHO43323 396 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 TWSG1Q9GZX9 223 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 NKX2-2O95096 273 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 FAM78AQ5JUQ0 283 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 FAM209BQ5JX69 171 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 ELSPBP1Q96BH3 223 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 MPTX1A8MV57 137 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 OR5R1Q8NH85 324 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 FUT9Q9Y231 359 aa11.83□□□□□ -0.52
COL6A3-209ENST00000472056 F5H697 171 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 OR1N1Q8NGS0 311 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 USF3Q68DE3 2245 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 TCF21O43680 179 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 TMPRSS11DO60235 418 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 GHRHP01286 108 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 KLF9Q13886 244 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-209ENST00000472056 FAM27D1Q5T7N8 215 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 C9orf135Q5VTT2 229 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 FBXL14Q8N1E6 418 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 VN1R17PQ8TDU5 208 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 SFRP2Q96HF1 295 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 OR2W1Q9Y3N9 320 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 WIPI2Q9Y4P8 454 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 NUDT3O95989 172 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 PPP1R17O96001 155 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 GALNSP34059 522 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 MEF2BQ02080 365 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-209ENST00000472056 WDR38Q5JTN6 314 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 FAM209AQ5JX71 171 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 LDLRAD1Q5T700 205 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 CST9Q5W186 159 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 CA13Q8N1Q1 262 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 OR6X1Q8NH79 312 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 PARD6GQ9BYG4 376 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-209ENST00000472056 IGLV3-16A0A075B6K0 115 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 FOLR2P14207 255 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 ACAA2P42765 397 aaKnown RBP11.82□□□□□ -0.52
COL6A3-209ENST00000472056 TEPPQ6URK8 271 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 C6orf15Q6UXA7 325 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-209ENST00000472056 OR8G5Q8NG78 346 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 HHIPQ96QV1 700 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 FGF17O60258 216 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 LBX1P52954 281 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 RPS20P60866 119 aaKnown RBP11.82□□□□□ -0.52
COL6A3-209ENST00000472056 SELENOTP62341 195 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 H3BP45 60 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 NUP37Q8NFH4 326 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 PRDM7Q9NQW5 492 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 C1RLQ9NZP8 487 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 LYZL6O75951 148 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 FCARP24071 287 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 TCL1AP56279 114 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 GLCCI1Q86VQ1 547 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 LRP5O75197 1615 aa11.82□□□□□ -0.52
COL6A3-209ENST00000472056 CFDP00746 253 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 CRYABP02511 175 aaKnown RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 HOXC4P09017 264 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 DMKNQ6E0U4 476 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 NUBPLQ8TB37 319 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 TSPAN13O95857 204 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 EPHA8P29322 1005 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 OR2V1Q8NHB1 315 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 KISS1RQ969F8 398 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 SNRNP40Q96DI7 357 aaKnown RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 GABRG3Q99928 467 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 VN1R1Q9GZP7 353 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 HCFC1R1Q9NWW0 138 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 OR51B4Q9Y5P0 310 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 IL11RAQ14626 422 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 MRGPREQ86SM8 312 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 CAMPP49913 170 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 MYBPHQ13203 477 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 C10orf126Q8N4M7 172 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 MEGF10Q96KG7 1140 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 TBX15Q96SF7 602 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 ELOVL1Q9BW60 279 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 ALG1L2C9J202 215 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 EMP1P54849 157 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 PRDX4Q13162 271 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms