RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ZNF100Q8IYN0 542 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 IL22RA1Q8N6P7 574 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 DDIT4LQ96D03 193 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 CAPNS2Q96L46 248 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 SMDT1Q9H4I9 107 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 C8orf33Q9H7E9 229 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 DOCK11Q5JSL3 2073 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 TRDCB7Z8K6 153 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 DHRS3O75911 302 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 PATE4P0C8F1 98 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 MYF5P13349 255 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 ECI1P42126 302 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 RPS18P62269 152 aaKnown RBP10.11□□□□□ -0.79
CPSF3-202ENST00000460593 H3F3AP84243 136 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 TLE4Q04727 773 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 OR6X1Q8NH79 312 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 RAB24Q969Q5 203 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 FAM131CQ96AQ9 280 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF837Q96EG3 531 aaPredicted RBP10.11□□□□□ -0.79
CPSF3-202ENST00000460593 KLRF1Q9NZS2 232 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 A0A0G2JRQ6 117 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 DFFBO76075 338 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 POU2F2P09086 479 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 BCL2P10415 239 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 SFTPCP11686 197 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 BMP5P22003 454 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 TESK1Q15569 626 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF705AQ6ZN79 300 aaPredicted RBP10.11□□□□□ -0.79
CPSF3-202ENST00000460593 SLC16A14Q7RTX9 510 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 LRTM2Q8N967 370 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 OR1N1Q8NGS0 311 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 GATAD1Q8WUU5 269 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 LRRC61Q9BV99 259 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 ACTR3CQ9C0K3 210 aaPredicted RBP10.11□□□□□ -0.79
CPSF3-202ENST00000460593 RBKSQ9H477 322 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 SLC7A10Q9NS82 523 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 DKKL1Q9UK85 242 aa10.11□□□□□ -0.79
CPSF3-202ENST00000460593 IAPPP10997 89 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 ARL6IP1Q15041 203 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 LBHQ53QV2 105 aaPredicted RBP10.1□□□□□ -0.79
CPSF3-202ENST00000460593 SLC25A47Q6Q0C1 308 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 GPR137CQ8N3F9 429 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 FER1L5A0AVI2 2057 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 TCRBV21S2A2A0A5A6 115 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF732B4DXR9 585 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 PPYP01298 95 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 FGF5P12034 268 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 FOSL2P15408 326 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 CAPZBP47756 277 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 PCP4P48539 62 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 FAM189A2Q15884 450 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 EXT1Q16394 746 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 TDRG1Q3Y452 100 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF818PQ6ZRF7 136 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 SELENOHQ8IZQ5 122 aaKnown RBP10.1□□□□□ -0.79
CPSF3-202ENST00000460593 GAPTQ8N292 157 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 MOB3AQ96BX8 217 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 TMEM208Q9BTX3 173 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 METTL9Q9H1A3 318 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF442Q9H7R0 627 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 ALKBH4Q9NXW9 302 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 PIAS3Q9Y6X2 628 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 TRBV24-1A0A075B6N3 115 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 IGKV1D-13A0A0B4J2D9 117 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 ANKUB1A6NFN9 424 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 NUPR1O60356 82 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 IGKV1-13P0DP09 117 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 CEACAM6P40199 344 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 TDGF1P3P51864 188 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 NUBP1P53384 320 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 PAX9P55771 341 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 DLX2Q07687 328 aaPredicted RBP10.1□□□□□ -0.79
CPSF3-202ENST00000460593 DNLZQ5SXM8 178 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 POC1BQ8TC44 478 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 RBMXL1Q96E39 390 aaKnown RBP10.1□□□□□ -0.79
CPSF3-202ENST00000460593 SIGLEC12Q96PQ1 595 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 GABRG3Q99928 467 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 SMIM7Q9BQ49 75 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 RBM24Q9BX46 236 aaKnown RBP10.1□□□□□ -0.79
CPSF3-202ENST00000460593 TMEM222Q9H0R3 208 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 SEMA5BQ9P283 1151 aa10.1□□□□□ -0.79
CPSF3-202ENST00000460593 LRRC3CA6NJW4 275 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 DEFA4P12838 97 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 CTHP32929 405 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF133P52736 654 aaPredicted RBP10.09□□□□□ -0.79
CPSF3-202ENST00000460593 TAS2R30P59541 319 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 CD81P60033 236 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 FAM69BQ5VUD6 431 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 ABLIM2Q6H8Q1 611 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 TMEM256Q8N2U0 113 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 OR1K1Q8NGR3 316 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 PLEK2Q9NYT0 353 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 ST3GAL6Q9Y274 331 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 POLR3KQ9Y2Y1 108 aaPredicted RBP10.09□□□□□ -0.79
CPSF3-202ENST00000460593 BLACEA4D250 179 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 MARCH11A6NNE9 402 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 OR7C1O76099 320 aaPredicted RBP10.09□□□□□ -0.79
CPSF3-202ENST00000460593 OPN1MWP04001 364 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 OPN1MW2P0DN77 364 aa10.09□□□□□ -0.79
CPSF3-202ENST00000460593 OPN1MW3P0DN78 364 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms