RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CIB1Q99828 191 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 GABARAPL1Q9H0R8 117 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 RIBC2Q9H4K1 309 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 RYR3Q15413 4870 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 IGKV1-12A0A0C4DH73 117 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A18PA6NE21 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A16PA6NEW6 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A20PA6NIJ5 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A9PA6NNJ1 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A12PA8MX19 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A5PA8MXJ8 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 J3QLW9 94 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 SLC33A1O00400 549 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FGF16O43320 207 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 IGKV1D-12P01611 117 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 SNRNP70P08621 437 aaKnown RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 HCKP08631 526 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A15PP0C7V4 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A13PP0C7W8 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A14PP0C7W9 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 FAM90A24PP0C7X0 464 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF19P17023 458 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 GZMHP20718 246 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 POLR2IP36954 125 aaKnown RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 MTNR1BP49286 362 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 RPL23AP62750 156 aaKnown RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 ATXN7L3Q14CW9 347 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 C17orf58Q2M2W7 97 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 MEDAGQ5VYS4 303 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 C11orf87Q6NUJ2 197 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 Q6P435 159 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 OR2W3Q7Z3T1 314 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 AMIGO2Q86SJ2 522 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 OR8H3Q8N146 312 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 OR10A7Q8NGE5 316 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 OR13C9Q8NGT0 318 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 SLC7A6OSQ96CW6 309 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 KIRREL1Q96J84 757 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 NR1H4Q96RI1 486 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-204ENST00000448905 ORC6Q9Y5N6 252 aa10.54□□□□□ -0.72
HMGB3-204ENST00000448905 H0YJX3 145 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 GDNFP39905 211 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 HNF4GQ14541 408 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 KISS1Q15726 138 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 PAN3Q58A45 887 aaKnown RBP10.53□□□□□ -0.72
HMGB3-204ENST00000448905 TEX38Q6PEX7 206 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 RNF144BQ7Z419 303 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 SLC35E3Q7Z769 313 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF695Q8IW36 515 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 DRAM1Q8N682 238 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 ACBD7Q8N6N7 88 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 OR51T1Q8NGJ9 327 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 OR10X1Q8NGY0 326 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 OR56B4Q8NH76 319 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 RNFT2Q96EX2 444 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 CENPNQ96H22 339 aaPredicted RBP10.53□□□□□ -0.72
HMGB3-204ENST00000448905 COQ2Q96H96 371 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 SPACA5Q96QH8 159 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 FAM118AQ9NWS6 357 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 CALYQ9NYX4 217 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 IDI2-AS1Q9NZ38 188 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 PSG11Q9UQ72 335 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 MYRFQ9Y2G1 1151 aa10.53□□□□□ -0.72
HMGB3-204ENST00000448905 NCBP2LA6PVI3 153 aaKnown RBP10.52□□□□□ -0.73
HMGB3-204ENST00000448905 IGHG2P01859 326 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 GAPDHP04406 335 aaKnown RBP10.52□□□□□ -0.73
HMGB3-204ENST00000448905 CCDC159P0C7I6 412 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 CGB3P0DN86 165 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 CGB7P0DN87 165 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 GLP1RP43220 463 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 KCNJ3P48549 501 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 ALKBH1Q13686 389 aaKnown RBP10.52□□□□□ -0.73
HMGB3-204ENST00000448905 CDK5R1Q15078 307 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 PNLIPRP3Q17RR3 467 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 SLC25A30Q5SVS4 291 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 ELP2Q6IA86 826 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 C8orf86Q6ZUL3 223 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 C5orf56Q8N8D9 126 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 KLHL30-AS1Q8NEE0 82 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 CNIH3Q8TBE1 160 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 NOL4LQ96MY1 436 aaPredicted RBP10.52□□□□□ -0.73
HMGB3-204ENST00000448905 GPER1Q99527 375 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 GABARAPL3Q9BY60 117 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 LINC00574Q9H8X3 128 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 KIF25Q9UIL4 384 aa10.52□□□□□ -0.73
HMGB3-204ENST00000448905 NOTCH3Q9UM47 2321 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 AP4M1O00189 453 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 HSPB6O14558 160 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 SULT1B1O43704 296 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 IL1AP01583 271 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 RAB25P57735 213 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 NANOS3P60323 173 aaKnown RBP10.51□□□□□ -0.73
HMGB3-204ENST00000448905 MRPL28Q13084 256 aaKnown RBP10.51□□□□□ -0.73
HMGB3-204ENST00000448905 RSU1Q15404 277 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 ZNF691Q5VV52 312 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 C1orf146Q5VVC0 180 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 MOB3BQ86TA1 216 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 SATL1Q86VE3 508 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 PXT1Q8NFP0 134 aa10.51□□□□□ -0.73
HMGB3-204ENST00000448905 OR51A4Q8NGJ6 313 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms